PlantTFDB
Plant Transcription Factor Database
PlantRegMap/PlantTFDB v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016649537.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 302aa    MW: 32396.6 Da    PI: 7.6598
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016649537.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26099.82.6e-3141081100
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C++lr++C+++C ++p++     p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg+++++++ql++l
  XP_016649537.1   4 SCNGCRILRKGCSENCSIRPCLqwiksPESQANATVFLAKFYGRAGLMNLINAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCHL 98 
                     6********************************************************************************************** PP

          DUF260  91 kaelallkee 100
                     ++e++l +++
  XP_016649537.1  99 AVEAVLKGQP 108
                     ***9998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381551.1E-961297IPR017414LOB domain-containing protein 10/36/41
PROSITE profilePS5089117.1253109IPR004883Lateral organ boundaries, LOB
PfamPF031956.2E-254103IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MRMSCNGCRI LRKGCSENCS IRPCLQWIKS PESQANATVF LAKFYGRAGL MNLINAGPEH  60
LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCHLAV EAVLKGQPIT SITSEAAADG  120
HGPPLKAYDI RHVSKDENSA ASNEPKQAKT RYRFKRSVVK PKPSKVGSGS GSGADDSAKP  180
SCVGCCADEL NRSTSHESSL SHQSEAAANV DGESKETESM VSSETAEAEL LFRAEPESAL  240
KRSEPVQEGE LALELTLGLE PQSRAHHVVP VKKRRIDAYG LGGRSSADDG GCKMELGLDL  300
VA
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_016649537.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016649537.10.0PREDICTED: LOB domain-containing protein 41
SwissprotQ9M8861e-113LBD41_ARATH; LOB domain-containing protein 41
TrEMBLM5WTB80.0M5WTB8_PRUPE; Uncharacterized protein
STRINGXP_008230405.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15463499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.13e-97LOB domain-containing protein 41