PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016648489.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family NAC
Protein Properties Length: 320aa    MW: 36878.1 Da    PI: 7.3716
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016648489.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.51.8e-51221512128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                      pGfrFhPtdeelv +yL++kve+k +++ e ik++diyk++PwdLpk++++ +ekewyfF+kr +ky+++ r+nr+t sg+Wkatg dk+++s+
  XP_016648489.1  22 LPGFRFHPTDEELVEFYLRRKVEKKAISI-ELIKSIDIYKHDPWDLPKAISTsGEKEWYFFCKRGRKYKNSIRPNRVTGSGFWKATGIDKPIHSH 115
                     59***************************.89***************655442788**************************************8 PP

             NAM  96 ...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +++ +glkktLv+y+g+a kg+ktdW+mhe+rl
  XP_016648489.1 116 ggqGHACIGLKKTLVYYRGSAGKGTKTDWMMHEFRL 151
                     5544445***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100553.10321190IPR003441NAC domain
SuperFamilySSF1019413.53E-5421190IPR003441NAC domain
PfamPF023651.4E-2623151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MDSNYTSTKD DHQYIDEDDV QLPGFRFHPT DEELVEFYLR RKVEKKAISI ELIKSIDIYK  60
HDPWDLPKAI STSGEKEWYF FCKRGRKYKN SIRPNRVTGS GFWKATGIDK PIHSHGGQGH  120
ACIGLKKTLV YYRGSAGKGT KTDWMMHEFR LPNPAGSNEY IHRSSNTKNI NSTDPQQEAE  180
IWTLCRIFKR NVSYKKADWR GQSGAKRHPM DTVSSKKCTS DQDDLDQSNN YISFGASDNI  240
ICYEEKKPVV NHTNMNNFNG SNQQLHAVGQ LSSNMPATYP YMETFSNFSY QDLENELLNE  300
NWDELRSAAV HLAFDPTFLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-49121963171NO APICAL MERISTEM PROTEIN
1ut4_B2e-49121963171NO APICAL MERISTEM PROTEIN
1ut7_A2e-49121963171NO APICAL MERISTEM PROTEIN
1ut7_B2e-49121963171NO APICAL MERISTEM PROTEIN
4dul_A2e-49121963171NAC domain-containing protein 19
4dul_B2e-49121963171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00353DAPTransfer from AT3G12910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_016648489.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016648489.10.0PREDICTED: transcription factor JUNGBRUNNEN 1
SwissprotQ9SK558e-81NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A314Z6S30.0A0A314Z6S3_PRUYE; Transcription factor JUNGBRUNNEN 1
STRINGXP_008226178.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101334112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.13e-83NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]