PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016648403.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family FAR1
Protein Properties Length: 692aa    MW: 80088.8 Da    PI: 6.0354
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016648403.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR168.41.8e-2169160190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 
                     ++Y ++A++ GFs+rk++s+ s + g i+kr+fvC+++g++  +kk t +++r r++ r+gC+ak+ ++ke     ++w v ++++ HnHel 
  XP_016648403.1  69 EYYGNFARKNGFSIRKERSRLSPQLG-IYKRDFVCYRSGFAPVKKKPTGEHHRDRKSVRCGCDAKMYLSKEVvdgVSQWFVVQFSNVHNHELL 160
                     59********************8888.*******************************************99867789*************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.0E-1969160IPR004330FAR1 DNA binding domain
PfamPF105518.4E-18293383IPR018289MULE transposase domain
PROSITE profilePS509669.693564599IPR007527Zinc finger, SWIM-type
PfamPF044341.8E-6568597IPR007527Zinc finger, SWIM-type
SMARTSM005757.4E-4574601IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 692 aa     Download sequence    Send to blast
MTSPPSKNIW IRRQQCPCGD WKCYVTYEGD SEETSSITSQ LVKNDSAGSE AMVSPYVGMV  60
FKSDDDAFEY YGNFARKNGF SIRKERSRLS PQLGIYKRDF VCYRSGFAPV KKKPTGEHHR  120
DRKSVRCGCD AKMYLSKEVV DGVSQWFVVQ FSNVHNHELL EDDQVRLLPA YRKIHEADQE  180
RILLLSKAGF PIHRIVKVLE LEKGIQGGQL PFLERDVRNF VQNRKKVVQE NDALLTEKRE  240
NDTLELLEAC KGTKEADEDF VYDFTVDEND KVEHIAWSYG DSVHAYTMFG DAVYFDTSYQ  300
SITYGVLFGA WLGIDNHGRT IFFGCVLLQD ETPRSFSWAL QTFVRFMRGR CPQTILTDLD  360
PGLRDAIRSE LPGTKHVVSI WNILPKVSSW FSVSLGSRCA EFKSEFDVLC RVESTEDFEL  420
QWNQMISMFG LTTDKHIALL YSFRASWALS YMKGYFLACM ATTAYSKSVD AFLKGVFSAQ  480
TCLRSFFEQV GISANFQNQA RQEMQYMHIK TCIPIEEHVR SILTPFAFNA LQHELVLAMQ  540
YAVSEMSNGS YLVRHFKEID GERLVIWIPE EEQIHCSCKE FESSGLLCRH SLRVFVVKNY  600
FQLPDKYYLN RWRKESSLDF YDDHITRTSD DEWFQDYHCL TETLFTESSI TKERADYVRR  660
ELTTQLTRIL NEVRNMPECE GVAMDLTFSP TG
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_016648403.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008227430.10.0PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 isoform X1
RefseqXP_016648403.10.0PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 isoform X1
SwissprotQ9LKR40.0FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBLM5WLZ40.0M5WLZ4_PRUPE; Uncharacterized protein
STRINGXP_008227430.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.10.0FAR1-related sequence 10
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]