PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016647471.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family NAC
Protein Properties Length: 207aa    MW: 23691.3 Da    PI: 4.856
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016647471.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM120.31.7e-3781311128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrF+Ptdeelvv++L++k++  +++  +vi+++++y ++Pw+L+ k+  e ++wyf+s+r         +nr+t++gyWka g +++v+++
  XP_016647471.1   8 LPPGFRFDPTDEELVVHFLQRKAALLPFHP-DVIPDLHLYPYDPWELDGKALREGNKWYFYSRRT--------QNRVTSNGYWKALGVEEPVITR 93 
                     79*************************999.99**************977677889******984........58******************99 PP

             NAM  96 ....kgelvglkktLvfykgrapk.gektdWvmheyrl 128
                         ++++vg+k+ L+fy g+ap+ g kt+W+mheyrl
  XP_016647471.1  94 sscnSTHKVGMKRYLAFYVGEAPNsGIKTNWIMHEYRL 131
                     88877888**********997765289*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.92E-455174IPR003441NAC domain
PROSITE profilePS5100544.8218175IPR003441NAC domain
PfamPF023652.5E-249131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010089Biological Processxylem development
GO:0043067Biological Processregulation of programmed cell death
GO:0048367Biological Processshoot system development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MGDDQFKLPP GFRFDPTDEE LVVHFLQRKA ALLPFHPDVI PDLHLYPYDP WELDGKALRE  60
GNKWYFYSRR TQNRVTSNGY WKALGVEEPV ITRSSCNSTH KVGMKRYLAF YVGEAPNSGI  120
KTNWIMHEYR LSPLSAGDGP SSSSTTTRSS SKRRGHLKTV NNEFSGYVLC RVYERDEDDD  180
DDDGTELSCL DEVFLSLDDL DEISLPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-37517617169NAC domain-containing protein 19
3swm_B1e-37517617169NAC domain-containing protein 19
3swm_C1e-37517617169NAC domain-containing protein 19
3swm_D1e-37517617169NAC domain-containing protein 19
3swp_A1e-37517617169NAC domain-containing protein 19
3swp_B1e-37517617169NAC domain-containing protein 19
3swp_C1e-37517617169NAC domain-containing protein 19
3swp_D1e-37517617169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_016647471.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016647471.11e-154PREDICTED: NAC domain-containing protein 104 isoform X1
SwissprotQ8GWK61e-73NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A314XRF31e-132A0A314XRF3_PRUYE; NAC domain-containing protein 104 isoform X1
STRINGXP_008218880.11e-130(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17363395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.13e-70xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]