PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008246387.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 243aa    MW: 27744 Da    PI: 10.0396
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008246387.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.17.2e-161154346
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
                    i n+s r+ tf kR+ g++KK +ELS+LCd+ ++ +i+s+   l
  XP_008246387.1 11 IANDSTRKATFKKRKRGLIKKISELSTLCDIPACALIYSQYESL 54
                    89*************************************87665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.8E-23160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.848150IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.92E-23295IPR002100Transcription factor, MADS-box
CDDcd002669.51E-32283No hitNo description
PRINTSPR004044.2E-10323IPR002100Transcription factor, MADS-box
PfamPF003193.4E-151151IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-102338IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-103859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MTRKKVKLVY IANDSTRKAT FKKRKRGLIK KISELSTLCD IPACALIYSQ YESLPDIWPS  60
PSGVQRVISQ FRNMPEMEQG RKMFNQETFL RQRIVKAHEQ LKRLRKENRE KEVSRVMFQT  120
LTGRPLQGLN MIDLNDLGWL IDQNVKELGE KIKSKREELL AQRSEVTVAA PNAAALPARA  180
GDHGMDLNMQ QPAMENTMQR PPCFSDVMTS QEPMGFGAAG GDDVLPFGDQ NHPAFWHNSP  240
FFH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLVYIANDSTRKATFKKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00553DAPTransfer from AT5G48670Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008246387.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008246387.10.0PREDICTED: agamous-like MADS-box protein AGL80
SwissprotQ9FJK36e-57AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLM5W3J81e-164M5W3J8_PRUPE; Uncharacterized protein
STRINGXP_008246387.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.18e-58AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]