PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008246386.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 247aa    MW: 28373.9 Da    PI: 10.3398
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008246386.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.65.3e-211150342
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                    i n+s r+ tf kR++g++KKA+ELS+LCd++++vii+s+
  XP_008246386.1 11 ITNDSARKATFKKRKKGLMKKANELSTLCDIQACVIIYSQ 50
                    89************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-26160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.754150IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.94E-26295IPR002100Transcription factor, MADS-box
CDDcd002663.99E-24285No hitNo description
PRINTSPR004041.4E-11323IPR002100Transcription factor, MADS-box
PfamPF003199.6E-201150IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-112338IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-113859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MTRKKVSLTY ITNDSARKAT FKKRKKGLMK KANELSTLCD IQACVIIYSQ YESHPEVWPS  60
PLGVQRIVSQ FRSLPEMDQS KKMVNQETFL RQRIVKANEQ LKKLRKENRE KEMSRVMFQS  120
LTGKPLQGLT MIDLNDLGWL IDQNLKELVD KIKTRKEELA QRNPVRVPPT PAAVPAAGDH  180
ALNLNMHATM ERQAFGLSNM GNTMQRPSWF TDMMNPNEQM GFGAVAEVLP FGDQYHHGLW  240
PNNPFFP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVSLTYITNDSARKATFKKRK
22125KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008246386.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP3475503e-58KP347550.1 Prunus pseudocerasus Agamous-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008246386.10.0PREDICTED: agamous-like MADS-box protein AGL80
SwissprotQ9FJK32e-58AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLM5W6M61e-161M5W6M6_PRUPE; MADS-box protein 30
STRINGXP_008246386.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-51AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]