PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008245759.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family GATA
Protein Properties Length: 179aa    MW: 19347.9 Da    PI: 9.4452
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008245759.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA581.3e-183265134
            GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                    Cs C tt+TplWR gp g+k+LCnaCG+++rk+g
  XP_008245759.1 32 CSDCMTTETPLWRGGPAGPKSLCNACGIRHRKRG 65
                    ********************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011413.7052680IPR000679Zinc finger, GATA-type
SMARTSM004014.9E-172677IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.65E-132869No hitNo description
Gene3DG3DSA:3.30.50.104.0E-163066IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.07E-133183No hitNo description
PfamPF003202.0E-163265IPR000679Zinc finger, GATA-type
PROSITE patternPS0034403257IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MMNWGRRFVA LESVLGRKEP FPQAMNGNKK RCSDCMTTET PLWRGGPAGP KSLCNACGIR  60
HRKRGIPTVS LMSKAPKRRR EKTCGGSSST ITTTYNIGAS ATYNNASATT AKSTFGSGGG  120
GINLNEPPKV RFVGFGEEVF LQDSQAEGEG EKQSQWREWG EVEQAAVCLL AMSCDSVFA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16179RKRGIPTVSLMSKAPKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008245759.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008245759.11e-131PREDICTED: GATA transcription factor 17-like
TrEMBLA0A251NYE11e-102A0A251NYE1_PRUPE; Uncharacterized protein (Fragment)
STRINGXP_008245759.11e-130(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15693298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16870.11e-22GATA transcription factor 17