PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008244623.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 404aa    MW: 43397 Da    PI: 7.5823
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008244623.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.49.9e-20193242255
             AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+W+AeIrd +     + +r++lg+f tae Aa+a+++a+++++g
  XP_008244623.1 193 RYRGVRQRP-WGKWAAEIRDpF-----KaARVWLGTFETAEAAAQAYDEAALRFRG 242
                     7********.**********66.....56*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103225.409193250IPR001471AP2/ERF domain
PfamPF008472.5E-13193242IPR001471AP2/ERF domain
SuperFamilySSF541716.15E-22193251IPR016177DNA-binding domain
SMARTSM003804.8E-35193256IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-32193251IPR001471AP2/ERF domain
PRINTSPR003673.0E-11194205IPR001471AP2/ERF domain
CDDcd000186.85E-15201252No hitNo description
PRINTSPR003673.0E-11216232IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006970Biological Processresponse to osmotic stress
GO:0009749Biological Processresponse to glucose
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MCVLKVAEKD QRAARHSNTG TEHSIEEWLY EPLVFSQQLQ QQQRQRGGGS GGGGGGSEIL  60
ASAGSSMLLR LDREREMSAM VSALAHVVAG DEELAAAESS LVINRQSEDV GGGLISSSVG  120
GSDSGTKRGR EEEEGCGSQS VTRLCRAFGE FPRQSSSPVL GEGSSTTPPT QTAFPPSTFV  180
YSATQIAEPI RRRYRGVRQR PWGKWAAEIR DPFKAARVWL GTFETAEAAA QAYDEAALRF  240
RGNKAKLNFP ENVRLRTPIA DSPATQLTIS APSNTLLSVA TSTEPIVHSQ AFQSMQHSSH  300
EASRNLLSYC KPVDVQRQQP MSLYDQMLLS SPATPSVSSS SSSPLASSVS SSSSSPPPPA  360
FSSLFWTQSS LPLRPATSDQ NSTAADFQSK QWSSSSHYSA PFSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-22192253163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00584DAPTransfer from AT5G64750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008244623.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT3695580.0KT369558.1 Prunus pseudocerasus AP2/EREBP family transcription factor-like protein 26 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008244623.10.0PREDICTED: ethylene-responsive transcription factor ERF110-like isoform X2
TrEMBLM5X8N30.0M5X8N3_PRUPE; Uncharacterized protein
STRINGXP_008244623.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64750.18e-29ERF family protein