PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008243431.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family FAR1
Protein Properties Length: 288aa    MW: 33656.4 Da    PI: 5.9772
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008243431.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR123.71.6e-073425290
            FAR1 52 rrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90
                    r+++a tr +C a++ v  ek +++++vt++e +HnH+l+
  XP_008243431.1  3 RSPKAITRENCSARFWVGYEKkRDVYVVTNFEPHHNHQLV 42
                    678899************99989***************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.9E-5342IPR004330FAR1 DNA binding domain
PfamPF105513.6E-28164258IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MIRSPKAITR ENCSARFWVG YEKKRDVYVV TNFEPHHNHQ LVSPLESPYL RFNRVVRNSD  60
LAQAVGMRRT LFITCQTYEY IVNQCGGYLN VGFQIKDMYN KLDASRREIL LDDNTEAALS  120
YLKAKGAMDP EFFCKFSVDD ENRLGNLFWR DSTSLLNYIA YDDVLIFNST YQTNVYDKPL  180
VLFVGSNNYR STVMFGCALL QDEIFETYKW LLETFMVSMK DKKPISILTD GVEAMHKAID  240
DVFPMSNHRL CSWHVSRNAQ DNLKDDELLR NLQACIWEPF ALDEFEKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008243431.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008243431.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLM5WQ971e-178M5WQ97_PRUPE; Uncharacterized protein
STRINGXP_008243431.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3265734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-43FAR1-related sequence 5