PlantTFDB
Plant Transcription Factor Database
PlantRegMap/PlantTFDB v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008243228.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 218aa    MW: 23234.4 Da    PI: 8.5861
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008243228.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260865.2e-2741081100
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C+++C ++p +     p++q++++ +++k++G++ +l+l++a  ++ r+++++sl+yeA+ r+ +P  G+vg+++++++  +q+
  XP_008243228.1   4 SCNGCRVLRKGCSEKCSIRPSIewiksPDSQANATLFLAKFYGRAGLLNLINAGAQHLRPAIFKSLLYEACGRIVNPTFGSVGLMSSGSWAQCQA 98 
                     6********************************************************************************************** PP

          DUF260  91 kaelallkee 100
                     +++++l++++
  XP_008243228.1  99 AVDAVLAGSP 108
                     **99988765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.0853109IPR004883Lateral organ boundaries, LOB
PfamPF031958.7E-214103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSEKCS IRPSIEWIKS PDSQANATLF LAKFYGRAGL LNLINAGAQH  60
LRPAIFKSLL YEACGRIVNP TFGSVGLMSS GSWAQCQAAV DAVLAGSPIS GLDADALNLI  120
PSPPNTSGDI RHVFRDSNSG ASRNKVATRN RFKRSMNKSK THPGSLTDFA TGSHMAQFCN  180
FPDPDDLCPS PEGNGAGGDY DGEVGLELTL GLVPMRLN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008243228.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008243228.11e-161PREDICTED: LOB domain-containing protein 42-like
SwissprotQ9M8863e-68LBD41_ARATH; LOB domain-containing protein 41
TrEMBLM5XZ871e-155M5XZ87_PRUPE; Uncharacterized protein
STRINGXP_008243228.11e-160(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15463499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.12e-69LOB domain-containing protein 41