PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008242623.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family HSF
Protein Properties Length: 331aa    MW: 37552 Da    PI: 5.1638
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008242623.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.55.7e-35131042102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     F++k+y++++d+++++lisw + +nsf+v+d+ +f++++Lp yFkh+nf+SFvRQLn+YgF+kv+ ++         weF++++F +g+++ll++
  XP_008242623.1  13 FVMKTYQMVNDPTTDKLISWGQANNSFIVVDPLDFSQRLLPAYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEWFLRGQTHLLRN 98 
                     9****************************************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     + r+k+
  XP_008242623.1  99 VVRRKH 104
                     *99985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004159.5E-549102IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.1E-3710102IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.5E-3310102IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000567.3E-191336IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.3E-2913102IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.3E-195163IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405276IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.3E-196476IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MMMEENNNVI APFVMKTYQM VNDPTTDKLI SWGQANNSFI VVDPLDFSQR LLPAYFKHNN  60
FSSFVRQLNT YGFRKVDPDR WEFANEWFLR GQTHLLRNVV RRKHMGKNSY SNSNSTTCLL  120
QGKHEELDDE EIVMEIARLK QEQKALEEEM ENMNKRLEAT ERRPQQMMAF LHKVAEDPEI  180
LPRIMLEKDR TFRAQLGEKK RRVMMITSTS SSSLGMGATN SVETEDEDDG TVGVISSSPE  240
PGFEMDSFYS TSPETSTARE WGRQRRGGGL GRAVQDPYNM NPTVSGHGIG NTSNSGYGYG  300
NRNGGAEVGY LTEEPTPAPP PYPFSLLEGS F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-241010226129Heat shock factor protein 1
5d5v_B6e-241010226129Heat shock factor protein 1
5d5v_D6e-241010226129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008242623.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008242623.10.0PREDICTED: heat stress transcription factor C-1
SwissprotQ9LV524e-90HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLA0A251NFN30.0A0A251NFN3_PRUPE; Uncharacterized protein
STRINGXP_008242623.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83673038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.15e-93heat shock transcription factor C1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]