PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008242523.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 282aa    MW: 30259.2 Da    PI: 4.6748
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008242523.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.6e-1863113155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  XP_008242523.1  63 PVYRGVRMRT-WGKWVSEIREPRK---KNRIWLGTFSTPEMAARAHDVAALCIKG 113
                     68*****998.**********854...59***********************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.5E-1263113IPR001471AP2/ERF domain
PROSITE profilePS5103223.07764121IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-3164121IPR001471AP2/ERF domain
SMARTSM003809.0E-3664127IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-2164121IPR016177DNA-binding domain
CDDcd000187.93E-3165121No hitNo description
PRINTSPR003674.9E-106576IPR001471AP2/ERF domain
PRINTSPR003674.9E-1087103IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MADPTNSETE SGFNSPSSPS PSSSGFSQSL PNSAQNPLPG SSDSPDPDQK RAKRARETSS  60
KHPVYRGVRM RTWGKWVSEI REPRKKNRIW LGTFSTPEMA ARAHDVAALC IKGNSAILNF  120
PGLAGSLPRP ESNSPRDIQT AAAKAASMEI TLNAAPPPSQ SSSPALSQSS SSLSSSSSSS  180
SLVGPTTSST TSGDAGTPEE LSEIVELPSL GTSYESAESG NEFVFVDSVE GWLYPPPWWH  240
NSHFEEEYGY NSIINNIRDD QMLMPEPPAA AECFVDALLW QH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-1955121572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008242523.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7324631e-129GU732463.1 Malus x domestica AP2 domain class transcription factor (AP2D39) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008242523.10.0PREDICTED: dehydration-responsive element-binding protein 3
SwissprotQ9LYD36e-67DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLM5W3301e-158M5W330_PRUPE; Uncharacterized protein
STRINGXP_008242523.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.11e-65ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,B├╝low L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]