PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008241428.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 200aa    MW: 22350.1 Da    PI: 4.6724
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008241428.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.51.8e-144393256
             AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56
                     ykGVr+  + g+Wv+e+r p     k+ r++lg+f  +++Aa+a++ a+++l+ge
  XP_008241428.1 43 IYKGVRQ--RCGKWVCELRQP---DqKKSRIWLGTFTCPDMAARAYDVAALALKGE 93
                    69***86..47******9998...3357*************************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.19E-2642101No hitNo description
PfamPF008477.4E-104293IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-1743102IPR016177DNA-binding domain
PROSITE profilePS5103219.34843100IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-2643102IPR001471AP2/ERF domain
SMARTSM003801.1E-2743106IPR001471AP2/ERF domain
PRINTSPR003671.2E-64455IPR001471AP2/ERF domain
PRINTSPR003671.2E-682102IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MTDFTDDASS SSNRVSAQAH LQSVEFKKRK AGRKKFNETR HPIYKGVRQR CGKWVCELRQ  60
PDQKKSRIWL GTFTCPDMAA RAYDVAALAL KGESAALNFP HEASTLPRIT STCSVKDLQC  120
AAAAAAEGFF EVEVKASGLE EKQEEEVVYL DEEELFNMPG LIDSLAEGLI LTPPAMQKGF  180
NWNDFDDDME NAVDFSLWSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-15411021274Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:17136305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008241428.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By calcium ion, methyl-jasmonate (MeJA), cold, drought, and high salinity stress. {ECO:0000269|PubMed:17136305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008241428.11e-149PREDICTED: dehydration-responsive element-binding protein 1F
SwissprotA2WZI43e-49DRE1F_ORYSI; Dehydration-responsive element-binding protein 1F
SwissprotQ8S9Z53e-49DRE1F_ORYSJ; Dehydration-responsive element-binding protein 1F
TrEMBLM5W9P61e-130M5W9P6_PRUPE; Uncharacterized protein
STRINGXP_008241428.11e-148(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25490.11e-32C-repeat/DRE binding factor 1
Publications ? help Back to Top
  1. Wang Q, et al.
    Overexpression of a rice OsDREB1F gene increases salt, drought, and low temperature tolerance in both Arabidopsis and rice.
    Plant Mol. Biol., 2008. 67(6): p. 589-602
    [PMID:18470484]
  2. Liu HH,Wang YG,Wang SP,Li HJ
    Cloning and characterization of peanut allene oxide cyclase gene involved in salt-stressed responses.
    Genet. Mol. Res., 2015. 14(1): p. 2331-40
    [PMID:25867379]