PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008240070.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 285aa    MW: 31495 Da    PI: 6.3723
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008240070.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.87.2e-20129178255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     +++GVr+++ +grW+AeIrdp+    r kr++lg+f+taeeAa  +++a+  l+g
  XP_008240070.1 129 KFRGVRRRP-WGRWAAEIRDPT----RrKRVWLGTFDTAEEAATVYDRAAVLLKG 178
                     89*******.**********84....34*********************977766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381235.8E-729284IPR017392AP2/ERF transcription factor ERF/PTI6
Gene3DG3DSA:3.30.730.102.2E-30129187IPR001471AP2/ERF domain
CDDcd000181.77E-32129188No hitNo description
PROSITE profilePS5103224.329129186IPR001471AP2/ERF domain
SMARTSM003803.6E-37129192IPR001471AP2/ERF domain
PfamPF008471.8E-12129173IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-22129187IPR016177DNA-binding domain
PRINTSPR003672.0E-10130141IPR001471AP2/ERF domain
PRINTSPR003672.0E-10152168IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MTSFQTISSV NPMVKFSEQV TTMTKLITHE NQNSPVNPTH LPPKLVRIIL TDADATDSSS  60
DEEDSGVRRV KRHVRQISLE LSSPSSSSSP SSSSSSFSSG HSKRLRKGQR PTKKLGSRSP  120
GSDQTRRNKF RGVRRRPWGR WAAEIRDPTR RKRVWLGTFD TAEEAATVYD RAAVLLKGPD  180
AVTNFPNAAM TEATVVTDVV VPAAEESYGC GSSTPNEAAT SPTSVLRYDE LTPFDGFRYG  240
EVDAFGFDID LPLSLPDIML SNNNNFAHDE FGEFDVNDFW VDVIC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-21116187473Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133152RRRPWGRWAAEIRDPTRRKR
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates the defense genes of plants. {ECO:0000269|PubMed:11971137}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008240070.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT3695550.0KT369555.1 Prunus pseudocerasus AP2/EREBP family transcription factor-like protein 23 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008240070.10.0PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like
SwissprotO046824e-62PTI6_SOLLC; Pathogenesis-related genes transcriptional activator PTI6
TrEMBLA0A251NJX40.0A0A251NJX4_PRUPE; Uncharacterized protein
STRINGXP_008240070.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55853252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53290.11e-28cytokinin response factor 3