PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008239044.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 311aa    MW: 34437.7 Da    PI: 8.5428
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008239044.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.5e-19115165256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      y+GVr+++ +g+WvAeIr p +   r r++lg+++tae Aa a+++a+ kl+ge
  XP_008239044.1 115 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYDTAEAAAYAYDRAAYKLRGE 165
                     59******9.**********954...5**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.22E-17114174No hitNo description
SuperFamilySSF541711.57E-22115172IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.7E-31115173IPR001471AP2/ERF domain
SMARTSM003801.1E-36115178IPR001471AP2/ERF domain
PROSITE profilePS5103223.301115172IPR001471AP2/ERF domain
PRINTSPR003673.9E-10116127IPR001471AP2/ERF domain
PfamPF008473.0E-13116165IPR001471AP2/ERF domain
PRINTSPR003673.9E-10138154IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MDTMQDSKLA FGFSDTIDIR SSLSNLILTS NTNTLDSIFS HCPQTLSTTT TTTSNNSSVS  60
EPLGSSVYLR QRDLLQKFCD ESRANAAVSR FFQKNPVQSS ACSSTSYMAP CKKKLYRGVR  120
QRHWGKWVAE IRLPQNRMRV WLGTYDTAEA AAYAYDRAAY KLRGEYARLN FPNLKDPSKM  180
GFGDCARLNA VKTSVDAKIQ AICQKVKRER AKKNAKKSSN SSENEKAVMK VDSSPSSSSP  240
SGFGDGSGQE LVSLTPTPTV SEDGLWRCEN SPPSISTEWS MGMAEDLEFE GCSLARMPSY  300
DPELIWEVIA N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-20112172263ATERF1
3gcc_A3e-20112172263ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008239044.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT3695570.0KT369557.1 Prunus pseudocerasus AP2/EREBP family transcription factor-like protein 25 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008239044.10.0PREDICTED: ethylene-responsive transcription factor ERF061
SwissprotQ9C7W23e-67ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLA0A314UGY30.0A0A314UGY3_PRUYE; Ethylene-responsive transcription factor ERF061
STRINGXP_008239044.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71813148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.16e-43ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]