PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008238788.1
Common NameCBFb
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 238aa    MW: 26558 Da    PI: 6.543
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008238788.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.61e-1555106155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                     + y+GVr +  +++Wv+e+r p   + k+  ++lg++ tae+Aa+a++ a+++++g
  XP_008238788.1  55 PVYRGVRSRD-NNKWVCELRQP---NkKKSGIWLGTYPTAEMAARAHDVAALAFKG 106
                     68*****888.8******9998...5477**********************99887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.3E-1155106IPR001471AP2/ERF domain
PROSITE profilePS5103220.77156114IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.6E-2856116IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-2056115IPR016177DNA-binding domain
SMARTSM003801.6E-2356120IPR001471AP2/ERF domain
PRINTSPR003672.8E-65768IPR001471AP2/ERF domain
CDDcd000183.74E-2557116No hitNo description
PRINTSPR003672.8E-68096IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MDTIFSQLSD SADQPKSSSS SDASVTTLRT SDVILASSRP KKRAGRRVFK ETRHPVYRGV  60
RSRDNNKWVC ELRQPNKKKS GIWLGTYPTA EMAARAHDVA ALAFKGKLAC LNFADSGWRL  120
PVAASMDSMD IQRRAAAEAA EGFRPVEFGG VSSDSSDEKE RTVVVEEKKK KQAIVDMGKS  180
CSRLNLFYSD EEEMFDMPRL IDDMAEGLLL SPPQCLAGYL NWDDMETESD PKLWSFSI
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008238788.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM0999100.0HM099910.2 Prunus mume CBF/DREB1-like protein b (CBFb) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008238788.11e-177PREDICTED: dehydration-responsive element-binding protein 1E-like
TrEMBLA0A1B1XXV81e-165A0A1B1XXV8_PRUMU; CBF/DREB1-like protein b
TrEMBLD5MCA51e-166D5MCA5_PRUMU; CBF/DREB1-like protein b
STRINGXP_008238788.11e-176(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.12e-53C-repeat-binding factor 4