PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008238784.1
Common NameCBFg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 239aa    MW: 26894.3 Da    PI: 6.1568
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008238784.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.75.1e-1759110155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     + y+GVr++  + +Wv+e r+p++   + r++lg++ tae+Aa+a++ a+++++g
  XP_008238784.1  59 PVYRGVRRRN-NDKWVCEMREPKKT--KSRIWLGTYPTAEMAARAHDVAALAFRG 110
                     68*****887.8*********9654..4************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.4E-1359110IPR001471AP2/ERF domain
SMARTSM003807.8E-2860124IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-2160120IPR016177DNA-binding domain
PROSITE profilePS5103222.16860118IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-3060120IPR001471AP2/ERF domain
PRINTSPR003671.3E-76172IPR001471AP2/ERF domain
CDDcd000189.01E-2861120No hitNo description
PRINTSPR003671.3E-784100IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MHRFLSDFSD SVDQPDSSSL SDASVTTLRT SWSDEDVILA SSRPKKRAGR RVFKETRHPV  60
YRGVRRRNND KWVCEMREPK KTKSRIWLGT YPTAEMAARA HDVAALAFRG KLACLNFADS  120
AWRLPVPASM DAMDIRRAAA EAAEGFRPVE FGGVSSSSSD EKESMVVQVE EKKKKGSVNM  180
ERSRSLSLSY WDEEEVLDMP RLLDHMAQGL LLSPPQCLGG DIWDDMGTDA DVELWSFSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1447117371Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold or dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008238784.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR6765350.0KR676535.1 Prunus mume CBF/DREB1-like protein g (CBFg) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008238784.11e-175PREDICTED: dehydration-responsive element-binding protein 1F-like
SwissprotQ9LN867e-62DRE1F_ARATH; Dehydration-responsive element-binding protein 1F
TrEMBLA0A0S2CWR81e-172A0A0S2CWR8_PRUMU; CBF/DREB1-like protein g
STRINGXP_008238784.11e-175(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.15e-57C-repeat-binding factor 4
Publications ? help Back to Top
  1. Kazama D,Kurusu T,Mitsuda N,Ohme-Takagi M,Tada Y
    Involvement of elevated proline accumulation in enhanced osmotic stress tolerance in Arabidopsis conferred by chimeric repressor gene silencing technology.
    Plant Signal Behav, 2014. 9(3): p. e28211
    [PMID:24614501]
  2. Kazama D, et al.
    Identification of Chimeric Repressors that Confer Salt and Osmotic Stress Tolerance in Arabidopsis.
    Plants (Basel), 2013. 2(4): p. 769-85
    [PMID:27137403]
  3. Song GQ,Gao X
    Transcriptomic changes reveal gene networks responding to the overexpression of a blueberry DWARF AND DELAYED FLOWERING 1 gene in transgenic blueberry plants.
    BMC Plant Biol., 2017. 17(1): p. 106
    [PMID:28629320]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]