PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008238782.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 275aa    MW: 29454.9 Da    PI: 4.6391
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008238782.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.31.4e-16102150255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+G+r ++  g+Wv+eIr+p++   +kr++lg+f tae+Aa+a++ a+++l+g
  XP_008238782.1 102 TYRGIR-CR-GGKWVSEIREPRK---TKRIWLGTFPTAEMAAAAYDVAALALKG 150
                     69***9.55.7*********843...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.047102158IPR001471AP2/ERF domain
SMARTSM003803.8E-26102166IPR001471AP2/ERF domain
SuperFamilySSF541715.1E-18102158IPR016177DNA-binding domain
PfamPF008479.5E-10102150IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.9E-26102158IPR001471AP2/ERF domain
CDDcd000182.98E-15103158No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MADPNPNSPN SLTNARQILL DQSTPTVASL DFHPPPPTHQ PLPPQPPPPP PPPPHTPYSL  60
LSLQHHTCEL TETPSPSTRA LEVDTVPKPT TMASTSSGKH PTYRGIRCRG GKWVSEIREP  120
RKTKRIWLGT FPTAEMAAAA YDVAALALKG ADVVLNFPGF IGSYPVPAST SAQDICSAAA  180
AAAATLRKNG DSRESPGQRQ KDDKDDVTVS NSINLESSSV GDFMDEEELF GMPNLLMDMA  240
EGMLVSPPRM NDSPPSDYDD SPGNSDGGES LLWSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-14991581172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00558DAPTransfer from AT5G52020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008238782.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT3695350.0KT369535.1 Prunus pseudocerasus AP2/EREBP family transcription factor-like protein 3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008238782.10.0PREDICTED: ethylene-responsive transcription factor ERF027-like
SwissprotQ9FJ903e-47ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A314ZSR21e-143A0A314ZSR2_PRUYE; AP2/EREBP family transcription factor-like protein 3
STRINGXP_008238782.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56232144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.13e-37ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]