PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008238758.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family TALE
Protein Properties Length: 291aa    MW: 33059.2 Da    PI: 6.8392
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008238758.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.78.4e-082402732154
                     HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     k +yp+++++++L +++gL+ +q+ +WF N+R +
  XP_008238758.1 240 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 273
                     469*****************************87 PP

2ELK25.53e-09194215122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELK +L++++++++ ++++E++
  XP_008238758.1 194 ELKIELKQGFKSRIEDVREEIL 215
                     9*******************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.0E-192670IPR005540KNOX1
PfamPF037901.2E-172869IPR005540KNOX1
SMARTSM012561.6E-2483138IPR005541KNOX2
PfamPF037912.1E-1886137IPR005541KNOX2
PROSITE profilePS512139.132194214IPR005539ELK domain
PROSITE profilePS5007111.677214277IPR001356Homeobox domain
SMARTSM003891.4E-10216281IPR001356Homeobox domain
SuperFamilySSF466893.81E-16216281IPR009057Homeodomain-like
CDDcd000864.70E-11217278No hitNo description
Gene3DG3DSA:1.10.10.606.7E-25221279IPR009057Homeodomain-like
PfamPF059209.7E-18234273IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010192Biological Processmucilage biosynthetic process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MQESGLGMMG GGGLSSGDAH HEHHNRQLKA EIATHPLYEQ LLSAHVSCLR VATPIDQLPL  60
IDAQLSQSHH LLRSYASQQQ HGHSVSPHER QELDNFLAQY LIVLCSFKEQ LQQHVRVHAV  120
EAVMACREIE SNLQALTGVS LGEGSGATMS DDEDDMQMDF SLDQSGGDGH DMMGFGPLLP  180
TESERSLMER VRQELKIELK QGFKSRIEDV REEILRKRRA GKLPGDTTTV LKNWWQQHSK  240
WPYPTEDDKA KLVEETGLQL KQINNWFINQ RKRNWHSNSQ SVTSLKSKRK R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A1e-12217273864Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1270290RKRNWHSNSQSVTSLKSKRKR
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in secondary cell wall biosynthesis. {ECO:0000269|PubMed:15980264}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008238758.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ0381320.0JQ038132.1 Prunus persica cultivar Chiripa KNOPE7 (KNOPE7) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008238758.10.0PREDICTED: homeobox protein HD1
SwissprotQ9FPQ81e-174KNAT7_ARATH; Homeobox protein knotted-1-like 7
TrEMBLM5WA760.0M5WA76_PRUPE; KNOPE7
STRINGXP_008238758.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63483450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.11e-172KNOTTED-like homeobox of Arabidopsis thaliana 7
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. He JB, et al.
    KNAT7 positively regulates xylan biosynthesis by directly activating IRX9 expression in Arabidopsis.
    J Integr Plant Biol, 2018. 60(6): p. 514-528
    [PMID:29393579]