PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008238480.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 214aa    MW: 23117 Da    PI: 5.7633
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008238480.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.87.7e-20147197255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+++AeIrdp +ng  +r++lg+f tae+Aa a+++a+ +++g
  XP_008238480.1 147 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTFETAEDAALAYDRAAYRMRG 197
                     8********.***********9987..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.6E-32146205IPR001471AP2/ERF domain
CDDcd000184.63E-32146205No hitNo description
SuperFamilySSF541711.83E-23147207IPR016177DNA-binding domain
PROSITE profilePS5103224.21147205IPR001471AP2/ERF domain
SMARTSM003801.3E-39147211IPR001471AP2/ERF domain
PfamPF008477.1E-14147197IPR001471AP2/ERF domain
PRINTSPR003673.7E-11148159IPR001471AP2/ERF domain
PRINTSPR003673.7E-11171187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051301Biological Processcell division
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MYGQSGTDAD ITLLDSIRRH LLGETDLRMG NSMANSVTGP IFSRSSSFSS LYPCLTENWG  60
DLPLKEDDSE DMVLYGVLRD AVNVGWVPSL GSGSADTCSL NFSVKSEPEV CGGGEVEEKQ  120
PPPLHPAGRV PPPPKAGPAV VPAKGKHYRG VRQRPWGKFA AEIRDPAKNG ARVWLGTFET  180
AEDAALAYDR AAYRMRGSRA LLNFPLRVNS GEPD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-44143212170ATERF1
3gcc_A4e-44143212170ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:9756931}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008238480.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1. Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2), whereas induction by wounding does not need EIN2. Induction by salicylic acid (SA) seems to be independent of PAD4 and NPR1. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11950980}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ0260090.0FJ026009.1 Prunus salicina ethylene responsive transcription factor 1a (ERF1a) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008238480.11e-157PREDICTED: ethylene-responsive transcription factor 1A, partial
SwissprotO803372e-78EF100_ARATH; Ethylene-responsive transcription factor 1A
TrEMBLC0J9I91e-128C0J9I9_9ROSA; Ethylene responsive transcription factor 1a
STRINGXP_008238480.11e-156(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22393382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.12e-58ethylene responsive element binding factor 1
Publications ? help Back to Top
  1. Zimmermann P,Hirsch-Hoffmann M,Hennig L,Gruissem W
    GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox.
    Plant Physiol., 2004. 136(1): p. 2621-32
    [PMID:15375207]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]