PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008238439.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 253aa    MW: 28258.5 Da    PI: 4.5865
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008238439.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.4e-1883133155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a++ ++g
  XP_008238439.1  83 PVYRGVRMRQ-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALTIKG 133
                     68*****998.**********843...6**********************99887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-1283133IPR001471AP2/ERF domain
PROSITE profilePS5103223.9284141IPR001471AP2/ERF domain
SMARTSM003801.6E-3884147IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-2284142IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.6E-3284142IPR001471AP2/ERF domain
PRINTSPR003673.0E-108596IPR001471AP2/ERF domain
CDDcd000184.08E-3385143No hitNo description
PRINTSPR003673.0E-10107123IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MEEEQFNSID SEAQTTSSSY SNSTTSSSAE SEAQKVSKRS NQQVLDHDQK GTNEDDDDDD  60
DEDQISQKKA KINDSNGRQH HDPVYRGVRM RQWGKWVSEI REPRKKSRIW LGTFPTPEMA  120
ARAHDVAALT IKGRSAVLNF PELAQELPRP ASASAKDIQA AAAKAAALNY PISCSSSSSS  180
SREADAETEA ELSQHRQAVH DTQDSSTSPS TNNDDTFFDL PDLLLDFGHH RDHGFCFSVP  240
WLEEPNNFLW MEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-17851411572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008238439.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT3695590.0KT369559.1 Prunus pseudocerasus AP2/EREBP family transcription factor-like protein 27 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008238439.10.0PREDICTED: ethylene-responsive transcription factor ERF039
SwissprotQ8LBQ75e-47ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A314YCF21e-144A0A314YCF2_PRUYE; Ethylene-responsive transcription factor ERF039
STRINGXP_008238439.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.17e-41ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]