PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008238368.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family FAR1
Protein Properties Length: 191aa    MW: 21983.3 Da    PI: 9.0533
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008238368.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR164.92.1e-2031119190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                     +fYn Y  e+GF +r s++++ +++ge+t++++vC k+g++ +++ +  ++rr+r  t+tgCkakl + k+k ++k+ v  l++ HnH+++
  XP_008238368.1  31 NFYNMYDVEAGFGIRCSTTRTCTMTGEVTRKEYVCCKQGYALTKTVS--HKRRRRGCTQTGCKAKLAILKMKdKNKYIVVGLNEVHNHDMN 119
                     6****************************************999877..999****************999989**************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.6E-1831119IPR004330FAR1 DNA binding domain
PROSITE profilePS508118.53667119IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MECEGQVTPE VRLELKPKLR LEFDYCDDVF NFYNMYDVEA GFGIRCSTTR TCTMTGEVTR  60
KEYVCCKQGY ALTKTVSHKR RRRGCTQTGC KAKLAILKMK DKNKYIVVGL NEVHNHDMNT  120
VDNVHLLRSH RNLTESTKAY SADMSKVNIP VHKQLSLLEV QVGRLENVGF VKRDVYNYLR  180
DIRGEVIGHV A
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008238368.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008238368.11e-141PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
STRINGXP_008238368.11e-140(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14110414
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.16e-24FAR1-related sequence 5