PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008237396.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family NAC
Protein Properties Length: 577aa    MW: 65456.8 Da    PI: 4.7388
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008237396.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.93.5e-52181442128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                     +pGfrFhPtdeelvv+yLk+k+ +k+l+l +vi+e+d+yk++P++Lp  + +k+++++w+fFs+rd+ky++g r+nrat++gyWkatgkd+++++
  XP_008237396.1  18 APGFRFHPTDEELVVYYLKRKICKKRLKL-NVIAETDVYKWDPEELPglSLLKTGDRQWFFFSPRDRKYPNGGRSNRATRHGYWKATGKDRNITC 111
                     69***************************.99***************644788899*************************************** PP

             NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++ vglkktLv+ykgrap+ge+tdWvmhey+l
  XP_008237396.1 112 -YSRSVGLKKTLVYYKGRAPSGERTDWVMHEYTL 144
                     .9999***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.84E-5812167IPR003441NAC domain
PROSITE profilePS5100554.18317167IPR003441NAC domain
PfamPF023651.6E-2719144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070301Biological Processcellular response to hydrogen peroxide
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    Send to blast
MGSEDDPEML FRNGRFCAPG FRFHPTDEEL VVYYLKRKIC KKRLKLNVIA ETDVYKWDPE  60
ELPGLSLLKT GDRQWFFFSP RDRKYPNGGR SNRATRHGYW KATGKDRNIT CYSRSVGLKK  120
TLVYYKGRAP SGERTDWVMH EYTLDEEELK RCRNVQEYYA LYKVYKKSGP GPKNGEQYGA  180
PFREEEWADD ELPVINNPAD RQIPVKQSVD VISVDPVKVN GEVHSALSDI EEFMKQIADE  240
AVLELPQMNG YAYTIPQAVS EEETQSTVVD LYSREVVCPE PNTVFNPSHH QGNLQASFDF  300
TQSDTSQIQR YEASEVTTSA PEIHEQGPPI LREEDFLEMD DLLGPEPTIS NIENPVDNLQ  360
FEGIDGLSEF DLYHDAAMFF HDMEPFDQGT VSHQQYMNSL GNNIVDQFEY QLQPNPPAVN  420
QVNHQLNPES TQMNNQLWTH TERAEPNQGC LSYSTSGVVY EPSNFASQAN QNQSGNEAAG  480
GPSQFSSALW AFVESIPTTP ASASENALVN RAFERMSSFS RLRINSVSAN VTAGSSSEAR  540
RAGRKRGFFF LPVVVALCAI FWVLMATLRP WWRCLSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-471914417140Stress-induced transcription factor NAC1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13544KRKICKKRLK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Transcriptional activator that acts as positive regulator of AOX1A during mitochondrial dysfunction. Binds directly to AOX1A promoter. Mediates mitochondrial retrograde signaling. {ECO:0000269|PubMed:24045017}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00179DAPTransfer from AT1G34190Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008237396.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold and drought stresses. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008237396.10.0PREDICTED: NAC domain-containing protein 17
SwissprotQ9XIC51e-170NAC17_ARATH; NAC domain-containing protein 17
TrEMBLM5W6F50.0M5W6F5_PRUPE; Uncharacterized protein
STRINGXP_008237396.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61313451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.11e-156NAC domain containing protein 17
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Van Aken O, et al.
    Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases.
    Plant Physiol., 2016. 171(3): p. 2150-65
    [PMID:27208304]
  3. Van Aken O,Ford E,Lister R,Huang S,Millar AH
    Retrograde signalling caused by heritable mitochondrial dysfunction is partially mediated by ANAC017 and improves plant performance.
    Plant J., 2016. 88(4): p. 542-558
    [PMID:27425258]
  4. Hu Z, et al.
    Mitochondrial Defects Confer Tolerance against Cellulose Deficiency.
    Plant Cell, 2016. 28(9): p. 2276-2290
    [PMID:27543091]
  5. Chi YH, et al.
    The membrane-tethered NAC transcription factor, AtNTL7, contributes to ER-stress resistance in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2017. 488(4): p. 641-647
    [PMID:28088515]
  6. Van Aken O,Pogson BJ
    Convergence of mitochondrial and chloroplastic ANAC017/PAP-dependent retrograde signalling pathways and suppression of programmed cell death.
    Cell Death Differ., 2017. 24(6): p. 955-960
    [PMID:28498364]
  7. Cheng P, et al.
    The ERA-Related GTPase AtERG2 Associated with Mitochondria 18S RNA Is Essential for Early Embryo Development in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 182
    [PMID:29497438]