PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008237259.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family FAR1
Protein Properties Length: 218aa    MW: 25378.6 Da    PI: 6.046
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008237259.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1842.5e-2667157190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     +fY eYAk++GF++r+++ ++s +n  i+ r+fvCs+eg+r+ +++  +++   +r+ tr gCka++++  +++g+w vtk+  eHnH+l+
  XP_008237259.1  67 DFYYEYAKRTGFTIRTNRIRHSLKNMAIIGRDFVCSREGFRAAKHTLrKDRVLPPRPITREGCKAMIRLAARDEGRWIVTKFIREHNHKLM 157
                     6*****************************************9998822333349**********************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.1E-2467157IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MEGGDGGRQF LDSDGGSDDE TFESFHEHNY SVEDDMPLQH CNFVNDGLIS MEPSTGMSFQ  60
SLDDARDFYY EYAKRTGFTI RTNRIRHSLK NMAIIGRDFV CSREGFRAAK HTLRKDRVLP  120
PRPITREGCK AMIRLAARDE GRWIVTKFIR EHNHKLMAHC KFPGELPIIN ILSEVEKDKK  180
IQDLYDELQR ERDRSAAFQQ QLCMILKDLE EHAEYISE
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008237259.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008237259.11e-164PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A251QZX91e-162A0A251QZX9_PRUPE; Uncharacterized protein
STRINGXP_008237258.11e-162(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF157281011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07500.16e-38FAR1 family protein