PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008236688.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 420aa    MW: 47850.5 Da    PI: 9.3938
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008236688.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.83.5e-171099398
                    EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3  3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                     +l+ s++l+ ++l++p +f++++  +   s+  tl  ++g++W+v +  ++ ++++++ +GW+eF +   +++g f++F+++grs+f  +v++f+
  XP_008236688.1 10 HKLILSSTLQAKQLMIPENFVKKFRDD--LSTVATLSVPDGNVWRVLI--KQADNKFWFHDGWQEFIERYSIRVGYFLTFRYEGRSSF--TVHIFN 99
                    5677789999999***********877..88899999***********..**************************************..888885 PP

2B3598.5e-19306395497
                     E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3   4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                     vl ps+  + ++++lp  fae++ +g++     ++l++++gr+W v++ yr+++    l++GW eF  +n+L egD++vF+l + +e  l+v+vf
  XP_008236688.1 306 VLRPSYLYRGCIMYLPSCFAEKNlNGVSG---FIKLQSSDGRQWPVRCLYRGGR--AKLSQGWYEFTLENNLGEGDVCVFELLKMKEVVLKVTVF 395
                     78899******************877743...5***************665555..66***********************98877776777765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.6E-22699IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.85E-23699IPR015300DNA-binding pseudobarrel domain
CDDcd100172.96E-19799No hitNo description
PROSITE profilePS5086313.5638101IPR003340B3 DNA binding domain
SMARTSM010194.1E-169101IPR003340B3 DNA binding domain
PfamPF023621.2E-141099IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-24296396IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.32E-24297396IPR015300DNA-binding pseudobarrel domain
CDDcd100172.38E-22301396No hitNo description
SMARTSM010198.1E-18303398IPR003340B3 DNA binding domain
PROSITE profilePS5086313.719303398IPR003340B3 DNA binding domain
PfamPF023626.0E-17306394IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0010048Biological Processvernalization response
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MKNMIRPCFH KLILSSTLQA KQLMIPENFV KKFRDDLSTV ATLSVPDGNV WRVLIKQADN  60
KFWFHDGWQE FIERYSIRVG YFLTFRYEGR SSFTVHIFNL TTAEINYQPN ALSSTGGSVY  120
RHQVFEEMED DDSVEILGST PKSIVTDSLR DKLFGDCANQ PIPGKDYNPP ALQNLFNGSK  180
PKNCTNWPDA GNPHPSKGSG LQAGNQSSRE IGVQFNVTEL KKTVDEVKLR SSGEDIRSMK  240
KTMRKKRKLD PTVQESSSQH EKEVEIRFRF YESASARKRT VTAEERERAI NAAKTFEPVN  300
PFCRVVLRPS YLYRGCIMYL PSCFAEKNLN GVSGFIKLQS SDGRQWPVRC LYRGGRAKLS  360
QGWYEFTLEN NLGEGDVCVF ELLKMKEVVL KVTVFCVVEA AGFVNQPPQQ NASQAKMIRN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A3e-7126939915144B3 domain-containing transcription factor VRN1
4i1k_B3e-7126939915144B3 domain-containing transcription factor VRN1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008236688.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008236688.10.0PREDICTED: B3 domain-containing transcription factor VRN1 isoform X2
SwissprotQ8L3W11e-132VRN1_ARATH; B3 domain-containing transcription factor VRN1
TrEMBLM5W2Q10.0M5W2Q1_PRUPE; Uncharacterized protein
STRINGXP_008236688.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21473485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-132B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Kumar A,Singh A,Panigrahy M,Sahoo PK,Panigrahi KCS
    Carbon nanoparticles influence photomorphogenesis and flowering time in Arabidopsis thaliana.
    Plant Cell Rep., 2018. 37(6): p. 901-912
    [PMID:29541883]