PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008236241.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 218aa    MW: 24749.2 Da    PI: 10.0321
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008236241.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF70.61.4e-221762449
                    -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     n+sn qvtfskRr g++KKA+EL++LC+aeva+i+fs+  k++ +
  XP_008236241.1 17 ANESNLQVTFSKRRSGLFKKASELCTLCGAEVAIIVFSPGRKVFSF 62
                    699************************************9999877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.6E-32665IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.549666IPR002100Transcription factor, MADS-box
CDDcd002658.06E-35775No hitNo description
SuperFamilySSF554557.33E-28789IPR002100Transcription factor, MADS-box
PRINTSPR004048.8E-19828IPR002100Transcription factor, MADS-box
PfamPF003191.4E-241662IPR002100Transcription factor, MADS-box
PRINTSPR004048.8E-192843IPR002100Transcription factor, MADS-box
PRINTSPR004048.8E-194364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009960Biological Processendosperm development
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MVRKSKGRQK VEMVKMANES NLQVTFSKRR SGLFKKASEL CTLCGAEVAI IVFSPGRKVF  60
SFGHPCVETL IDRYLSRNPP HHHHHQNSGT MQLIEAHRNA NVRELNGELT QISNQLEVEK  120
KRGDELNQVK KVTQAQCWWE GPLEGMEMSQ LEQLKTSLEE LKKNVARQAD RVLIQNTNPS  180
QFFVGSSSSH PNVGFNGNHV MPPHLPPHAW NPGYGRFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A1e-16782176Myocyte-specific enhancer factor 2A
3kov_B1e-16782176Myocyte-specific enhancer factor 2A
3kov_I1e-16782176Myocyte-specific enhancer factor 2A
3kov_J1e-16782176Myocyte-specific enhancer factor 2A
3p57_A1e-16782176Myocyte-specific enhancer factor 2A
3p57_B1e-16782176Myocyte-specific enhancer factor 2A
3p57_C1e-16782176Myocyte-specific enhancer factor 2A
3p57_D1e-16782176Myocyte-specific enhancer factor 2A
3p57_I1e-16782176Myocyte-specific enhancer factor 2A
3p57_J1e-16782176Myocyte-specific enhancer factor 2A
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008236241.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008236241.11e-163PREDICTED: agamous-like MADS-box protein AGL62
SwissprotQ9FKK22e-75AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLM5VUL01e-161M5VUL0_PRUPE; Uncharacterized protein
STRINGXP_008236241.11e-162(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.16e-78AGAMOUS-like 62
Publications ? help Back to Top
  1. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]
  2. Figueiredo DD,Batista RA,Roszak PJ,Köhler C
    Auxin production couples endosperm development to fertilization.
    Nat Plants, 2015. 1: p. 15184
    [PMID:27251719]
  3. Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
    Auxin production in the endosperm drives seed coat development in Arabidopsis.
    Elife, 2017.
    [PMID:27848912]
  4. Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
    Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal.
    Plant Signal Behav, 2017. 12(8): p. e1339000
    [PMID:28613109]
  5. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]