PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008236216.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 275aa    MW: 29927.9 Da    PI: 6.7828
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008236216.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF68.47e-221662349
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     en+s  qvtfskRr g++KKA+EL++LC+ae+a+i+fs+  k++ +
  XP_008236216.1 16 MENDSHLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFCF 62
                    69**************************************9998766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.7E-29665IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.366666IPR002100Transcription factor, MADS-box
CDDcd002651.81E-32775No hitNo description
SuperFamilySSF554557.72E-26787IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-17828IPR002100Transcription factor, MADS-box
PfamPF003192.0E-231562IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-172843IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-174364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MVKKTRGRQK VDMVKMENDS HLQVTFSKRR SGLFKKASEL CTLCGAEIAI IVFSPGKKVF  60
CFGHPGIETL LDRFEGTVPR QILNSETQKL IDGYRTAGLC EITDELTRVL EVLEEERKWG  120
DVLTQSMKTN KEGKWWQGPV EEMELDQLEA LKASLLELKS KVADEAKLRL SAAESANLAH  180
NPNFLVGSSS SSAAAQNASP VHNNFFVGSS SSCAAAGPSG LQGLVNPDIN NVLFNFNGND  240
HVMQAPHQPN NVGFNGNPNA MPLSGWNPNL GGGFL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008236216.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008236216.10.0PREDICTED: agamous-like MADS-box protein AGL62
SwissprotQ9FKK26e-59AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLM5VIK80.0M5VIK8_PRUPE; MADS-box protein 20
STRINGXP_008236216.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2286644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-45AGAMOUS-like 62
Publications ? help Back to Top
  1. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]
  2. Figueiredo DD,Batista RA,Roszak PJ,Köhler C
    Auxin production couples endosperm development to fertilization.
    Nat Plants, 2015. 1: p. 15184
    [PMID:27251719]
  3. Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
    Auxin production in the endosperm drives seed coat development in Arabidopsis.
    Elife, 2017.
    [PMID:27848912]
  4. Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
    Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal.
    Plant Signal Behav, 2017. 12(8): p. e1339000
    [PMID:28613109]
  5. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]