PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008235836.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family FAR1
Protein Properties Length: 795aa    MW: 90535.3 Da    PI: 6.7689
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008235836.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1101.67.6e-3290181291
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                     fYn+YA++vGFs+r+s+s++s+r+g i++r+fvC keg+r+ ++k+  +++ +r+r+ tr+gCka+l vk++++gkw+v+ +++eHnHel+p
  XP_008235836.1  90 FYNSYARRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNLNEKRtkDREIKRPRTITRVGCKASLSVKMQDSGKWVVSGFVKEHNHELVP 181
                     9***************************************998888545677889***********************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.4E-3090181IPR004330FAR1 DNA binding domain
PfamPF105516.9E-33302394IPR018289MULE transposase domain
PfamPF044345.0E-12570616IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096611.338582618IPR007527Zinc finger, SWIM-type
SMARTSM005751.2E-9593620IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 795 aa     Download sequence    Send to blast
MDNEVIEFDI GLGGGGGRDG DDDFVDIEHP VDDEEMVDSP LMSSATGSAS GIVVFGGGGS  60
GEIYLPEGDL LDLEPYDGME FESEEAAKAF YNSYARRVGF STRVSSSRRS RRDGAIIQRQ  120
FVCAKEGFRN LNEKRTKDRE IKRPRTITRV GCKASLSVKM QDSGKWVVSG FVKEHNHELV  180
PPDQVHCLRS HRQISGPAKT LIDTLQAAGM GPRRIMSALI KEYGGISKVG FTEVDCRNYM  240
RNNRQRSLDG DIQMLLDYLR QMQADNQNFF YAVQGDEDQS TGNVIWADPK ARMNYSYFGD  300
TVTFDTTYRS NRYRLPFAPF TGVNHHGQPV LFGCAFLINE SEASFVWLFK TWLMAMSGRH  360
PVSITTDHDA VIQSAIMQVF PQTRHRFCKW HIFKKCQEKL SHVFLKHPTF EADFHKCVNL  420
TESIDEFESC WLSLVDRYDL RDHEWLQTVY SARRQWVPVY LRDTFFAEMS ITQRSDSMNS  480
YFDGYVNAST NLSQFFKLYE KALESRNEKE VKADFETMNT APVLKTPSPM EKQASELYTK  540
KIFMRFQEEL VGTLTFTASK GDDDGEIITY QVAKFGEDHK AYYVKLNVLE MMATCSCQMF  600
EFSGLLCRHV LAVFRVTNVL TLPSHYILKR WTRNAKSSVM LEERSSDVYT NYLESHTVRY  660
NTLRHEAFKF VDGAKSSETY DIALDALKEA AKKVAHAPKN DGKTMVNGHV RGNLAGGASR  720
IHYASGDHEG SSGQHLSEDD MDKKIRELTN ELQCANRKCE VYRANLLSVL KDIEDHKLQL  780
SIKVQNIKIG MKDGL
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008235836.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008235836.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5
SwissprotQ9SZL80.0FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBLM5VLX00.0M5VLX0_PRUPE; Uncharacterized protein
STRINGXP_008235836.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.10.0FAR1-related sequence 5
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]