PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008235784.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family FAR1
Protein Properties Length: 316aa    MW: 36245.7 Da    PI: 8.1967
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008235784.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR172.97.1e-2348134190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     +fYn+YA+e+GFsvr  +skks ++ge++++++vC+keg+ ++e++     +r+r + r +Cka+l+v k+k g ++vt +e+ H+H+++
  XP_008235784.1  48 DFYNQYAREAGFSVRSYSSKKS-KDGEVIRKEYVCNKEGSWSTETSG--VVKRRRGVGRESCKARLVVVKSKYGGYVVTIFEEAHSHPMT 134
                     6*****************9999.8889****************9988..77888999******************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.1E-2048134IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MEANNGILLP METDPETNPS VSIFYPQVIG EFTPFQGQQF ETLEEVYDFY NQYAREAGFS  60
VRSYSSKKSK DGEVIRKEYV CNKEGSWSTE TSGVVKRRRG VGRESCKARL VVVKSKYGGY  120
VVTIFEEAHS HPMTTPRRRH LLKSHRRISG VNQLVAQQLI SVNVSTHQQY DILATQAGGI  180
ENVGFTQQDM YNSNRDRRMK IKGHDGEMLF DHFMNEQEKN PGFIFKVETN IEHKITRCFW  240
ADAISRQSYK FYGDAVIFDT TYNTNRYCMI FAPIMGVNKY GQTHDKRNCP MLQKSSSIVD  300
KDAFNGMDNS SSSQDD
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008235784.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008235784.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLM5WUA31e-109M5WUA3_PRUPE; Uncharacterized protein
STRINGXP_008235784.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14110414
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-38FAR1-related sequence 5