PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008235357.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family HSF
Protein Properties Length: 340aa    MW: 38525.1 Da    PI: 7.9337
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008235357.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.94.4e-35441352102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k++++++d+++++++sws+ g sfvv+d++ f  ++Lp+yFkhsnf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll++
  XP_008235357.1  44 FLTKTFDMVDDPSTNRIVSWSRGGGSFVVWDPHPFVMNLLPRYFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFVRGQKHLLKN 129
                     9****************************************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     ikrkk+
  XP_008235357.1 130 IKRKKT 135
                     ****96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467856.53E-3640133IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.2E-3840133IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.1E-6240133IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.7E-204467IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004478.4E-3244133IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.7E-208294IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434083107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.7E-2095107IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MNYLYPVKEE FPGSSSSQSG PGDPVVMIPP QPMEGLNDIG PPPFLTKTFD MVDDPSTNRI  60
VSWSRGGGSF VVWDPHPFVM NLLPRYFKHS NFSSFVRQLN TYGFRKVDPD RWEFANEGFV  120
RGQKHLLKNI KRKKTPSQPL PAQQALGPCV EVGRFGLDGE IDRLRRDKQV LMMELVKLRQ  180
QQQNTRAYLQ AMEQRIQGTE MKQQQMMAFL ARAMQNPAFM QQLVQQKDKR KELEEAMTKK  240
RRRPIDQGPS GVGGGKSSLK GKGTNLIKCE PLEFGDCDYE MSELEALALE MQGFGKARKE  300
QDEESERFEG DLSIPSAIVG EDEDVIILAD RLGYLGSCPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-254213518122Heat shock factor protein 1
5d5u_B3e-254213527131Heat shock factor protein 1
5d5v_B3e-254213527131Heat shock factor protein 1
5d5v_D3e-254213527131Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1228242KRKELEEAMTKKRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008235357.10.0PREDICTED: heat stress transcription factor A-6b
SwissprotQ9LUH81e-123HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A061DRG40.0A0A061DRG4_THECC; DNA binding protein, putative isoform 1
TrEMBLM5W4S90.0M5W4S9_PRUPE; Uncharacterized protein
STRINGVIT_00s0179g00150.t011e-159(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-113heat shock transcription factor A6B