PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008235129.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 320aa    MW: 35454.4 Da    PI: 5.1353
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008235129.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.71.4e-1878126355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     y+G+r+++ +g+W+AeIrdp++     r++lg+f t+eeAa+a+++ ++ ++g
  XP_008235129.1  78 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTPEEAARAYDREARIIRG 126
                     9*******.**********954...4*******************99988877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.85E-2277135IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-3177135IPR001471AP2/ERF domain
SMARTSM003801.9E-3777140IPR001471AP2/ERF domain
PROSITE profilePS5103223.02477134IPR001471AP2/ERF domain
PfamPF008478.0E-1278119IPR001471AP2/ERF domain
PRINTSPR003672.5E-117889IPR001471AP2/ERF domain
CDDcd000184.31E-3278135No hitNo description
PRINTSPR003672.5E-11100116IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MCGGAILADL IPRNRGLRVT ASDIWPNSPF AKLDPDNFFD SNPSPLTRTG SSPRKRAQPT  60
SGNRQEEKPP KRARKNLYRG IRQRPWGKWA AEIRDPRKGV RVWLGTFNTP EEAARAYDRE  120
ARIIRGKKAK VNFPNEDDDI PTQTYLRNPY PPPLFQTNSE NLSNSHMPKS FDLGFGYDLN  180
QIATISSNSN SKGLSSMNLV NRDPTVISGE ENSGSGSDGA YSSTAGLLGC NQNGSSCYGE  240
AEVKEAEETK EGILNKDAIA MMEENEVQKL SEELMAYENM MKFYQIPYLD GQSTATQQPP  300
AQEGMVGNLW SFDDEGVSAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-21731361074Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008235129.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8250970.0HQ825097.1 Prunus persica cultivar Venture ethylene responsive factor (ERF2.b) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008235129.10.0PREDICTED: ethylene-responsive transcription factor ERF071
TrEMBLM5VKI00.0M5VKI0_PRUPE; Uncharacterized protein
STRINGXP_008235129.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67713449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.13e-31ethylene-responsive element binding protein