PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008234629.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 374aa    MW: 41192.1 Da    PI: 6.6747
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008234629.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.31.2e-20180229255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+g
  XP_008234629.1 180 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYKLRG 229
                     59******9.**********965...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.14E-33179239No hitNo description
SMARTSM003807.1E-38180243IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-32180238IPR001471AP2/ERF domain
PROSITE profilePS5103223.143180237IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-23180238IPR016177DNA-binding domain
PRINTSPR003673.7E-11181192IPR001471AP2/ERF domain
PfamPF008473.8E-14181229IPR001471AP2/ERF domain
PRINTSPR003673.7E-11203219IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MATAIDLYSS SSMTPDLSDS LREDQLMKAL MPFMKSVSAT SSLTSISSSI SSPTSPSTSS  60
SFSSYPSSYT YHPPLYSSQP NLYPDFCSPS TTHMFDQVGF EQTGSIGLNQ LTPSQILQIQ  120
TQMVLQQQQE HQQKEQIAAL ASPASLQNQY QHQNPRTLKF LTPKAIPMKQ VGAPSKPTKL  180
YRGVRQRHWG KWVAEIRLPK NRTRLWLGTF DTAEEAALAY DKAAYKLRGD FARLNFPHLK  240
HQGAHVSGDF GHYKPLHSSV DAKLQAICQS LAANSAKQGK TGELCSVAER KPAISSPSEV  300
SLKTELKGEC ELTGVECYRP EISSSPSQSV ESSAGSSSPE SDITFLEFSD SQWDEAENFG  360
LEKYPSVEID WSAI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-22179237160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008234629.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT3695530.0KT369553.1 Prunus pseudocerasus AP2/EREBP family transcription factor-like protein 21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008234629.10.0PREDICTED: ethylene-responsive transcription factor RAP2-4
TrEMBLA0A314XJ780.0A0A314XJ78_PRUYE; AP2/EREBP family transcription factor-like protein 21
STRINGXP_008234629.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105732109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.12e-58related to AP2 4