PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008234444.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 250aa    MW: 28210.5 Da    PI: 6.0401
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008234444.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.19.4e-18156206255
             AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+++AeIrdp     k +r++lg+f+t  +Aaka++ a+ kl+g
  XP_008234444.1 156 HYRGVRRRP-WGKYAAEIRDP---ArKGTRIWLGTFDTDVDAAKAYDCAAFKLRG 206
                     7********.**********8...4445**********99*************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.4E-31155215IPR001471AP2/ERF domain
PfamPF008472.8E-12156206IPR001471AP2/ERF domain
PROSITE profilePS5103224.46156214IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-23156215IPR016177DNA-binding domain
CDDcd000181.82E-30156214No hitNo description
SMARTSM003801.1E-36156220IPR001471AP2/ERF domain
PRINTSPR003673.9E-13157168IPR001471AP2/ERF domain
PRINTSPR003673.9E-13196216IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MSNIHIHSIM HANQLSCSHF KMATPTHEEQ DESTLELIRQ HLLGDFTFTD GFFSHLNFQI  60
PDDDFSYDFQ PLVVKPECSL SESESTSPIS DPHCDNPQPC NFETNPETII SPSIKVEPLN  120
MSSPTKGKTT TSECTTPCSP DDKFQQVSGS GEVLRHYRGV RRRPWGKYAA EIRDPARKGT  180
RIWLGTFDTD VDAAKAYDCA AFKLRGRKAI LNFPLEAGQS SQPPVNTARK RRRSVKQEEE  240
ELPETELLKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-29155215161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A4e-29155215464ATERF1
3gcc_A4e-29155215464ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1228232RKRRR
2228233RKRRRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008234444.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT3695470.0KT369547.1 Prunus pseudocerasus AP2/EREBP family transcription factor-like protein 15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008234444.10.0PREDICTED: ethylene-responsive transcription factor ERF106
TrEMBLA0A251QMB61e-162A0A251QMB6_PRUPE; Uncharacterized protein
STRINGXP_008234444.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52573056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.13e-45ERF family protein