PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008233318.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ARF
Protein Properties Length: 674aa    MW: 74807.3 Da    PI: 7.0219
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008233318.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.82.1e-23123224199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f k+lt+sd+++ g +++p+ +ae++        +++ +   +  +d +g++W++++iyr++++r++lt+GW++Fv++++L +gD++vF   + +
  XP_008233318.1 123 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--NILAKDVHGETWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFF--RAE 213
                     89****************************987555556..69999********************************************..448 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     ++ l+v+++r+
  XP_008233318.1 214 SGDLCVGIRRA 224
                     9999****997 PP

2Auxin_resp113.52e-37284367183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                     aa+ a+++++FevvY+Prast+eF+vk+ +v++a++++++ GmRfkm fetedss++++ +Gt++ v+ +dp+rWp+S+Wr+L+
  XP_008233318.1 284 AATLAASGQPFEVVYYPRASTPEFCVKATSVRAAMQIQWCSGMRFKMPFETEDSSRISWfMGTISYVQVADPSRWPESPWRLLQ 367
                     68899*****************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.11E-30116226IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-36118226IPR015300DNA-binding pseudobarrel domain
CDDcd100173.66E-21122223No hitNo description
PfamPF023621.4E-21123224IPR003340B3 DNA binding domain
PROSITE profilePS5086313.155123225IPR003340B3 DNA binding domain
SMARTSM010193.0E-22123225IPR003340B3 DNA binding domain
PfamPF065071.4E-32284367IPR010525Auxin response factor
PROSITE profilePS5174513.932599674IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 674 aa     Download sequence    Send to blast
MITVMDSVRG PMNNNSEKWL LDSKFWHACA GGMVQMPHIN SKIFYFPQGH AECAHGKVDF  60
GNSRIPPLIL SRISAIRYMA DHETDEVYAK MKLIPIRENA FDLEDGFVEN NGTVENPEKP  120
TSFAKTLTQS DANNGGGFSV PRYCAETIFP RLDYSAEPPV QNILAKDVHG ETWKFRHIYR  180
GTPRRHLLTT GWSNFVNQKK LVAGDSIVFF RAESGDLCVG IRRAKRGIGG GPEYPSGWNP  240
AAENSGSHYG RYSGFPRENG NNLMERNSSG EWRGKIRAEY VIEAATLAAS GQPFEVVYYP  300
RASTPEFCVK ATSVRAAMQI QWCSGMRFKM PFETEDSSRI SWFMGTISYV QVADPSRWPE  360
SPWRLLQVSW DEPDLLQNVK RVSPWLVELV SSIPAIHLSP FSPPRKKLRL QHNPDYSLVS  420
QLPMPSVCSN FLNSSNPLCS VSDKISAGIQ GARQAQFGLS SSDVFFNKLH SGMFPVGFQK  480
LGHFAPSGIP EGNFMHMAES NENITCCLTK GIPSQSLKGN GEIKTPHIFL FGQLILTEQQ  540
MSKSSSGDCS SSDGHPEKKG NCSDGSGSAL HRNGSVENSS DEGSPWNKDH QKSNVSLETS  600
YCKVFIESGD VGTLDLSVLG SYKELYGKLA DMFGLENSEM LRNVLYGDAE GAIKHTEDEP  660
FSEFLKTARR LYMG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A4e-781338843388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008233318.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008233318.10.0PREDICTED: auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A2L1GH190.0A0A2L1GH19_9ROSA; Auxin response factor
STRINGXP_008233318.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]