PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008233248.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 361aa    MW: 39179.1 Da    PI: 7.2586
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008233248.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.00031249271123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++Cg  F++   L  H+r+H
  XP_008233248.1 249 HECSICGAEFTSGQALGGHMRRH 271
                     78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.9E-12158183IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.72159186IPR007087Zinc finger, C2H2
SuperFamilySSF576671.04E-8159181No hitNo description
SMARTSM003550.13159181IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280161181IPR007087Zinc finger, C2H2
SuperFamilySSF576671.04E-8244271No hitNo description
PfamPF139125.4E-13248273IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.034249276IPR007087Zinc finger, C2H2
SMARTSM003550.01249271IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280251271IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MEAAGGGDHH HLHQEEVIMG CKEQQHNNII IKGKRTKRLR PQSPIPFAIP TSSSSPEDGG  60
GGDGGGENDY INSATNLSPT TSAEFQDSTT EEEEDMANCL ILLAQGQSRA ASSSPSHHHH  120
QPQNDHNTTS RRFLEATTAV GPTGAKAGAV AAGGGYYAYE CKTCNRAFPS FQALGGHRAS  180
HKKPKANTGD DQKNKHFAIG LLPSDEDDTQ LFKNSILHNN NNTSSSPLSL HLSNRGLVLS  240
SNKSSSKVHE CSICGAEFTS GQALGGHMRR HRAPAAANTT LALTAPSVPA FEPQQHQNQH  300
QQQPIKKQRS ILSLDLDLNL PAPEDDHHRE SKLVFATSKQ QQQQQQQPER LRTQILVDCH  360
Y
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00487DAPTransfer from AT5G04390Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008233248.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008233248.10.0PREDICTED: zinc finger protein ZAT5
TrEMBLM5X3540.0M5X354_PRUPE; Uncharacterized protein
STRINGXP_008233248.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.12e-47C2H2 family protein