PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008233221.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 287aa    MW: 32322.1 Da    PI: 4.6349
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008233221.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39.5e-1998149156
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                     ++++GVr+++ +grW+AeIr p++   r+r++lg+f+taeeA  a+++a+ +++g+
  XP_008233221.1  98 KKFRGVRQRP-WGRWAAEIRNPTS---RARVWLGTFDTAEEAGLAYDRAAIAFKGH 149
                     59********.**********965...4**********************999886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381231.6E-401274IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000181.19E-3098155No hitNo description
PfamPF008471.8E-1399149IPR001471AP2/ERF domain
SMARTSM003801.8E-3199162IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-2099155IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.9E-2899156IPR001471AP2/ERF domain
PROSITE profilePS5103222.2699156IPR001471AP2/ERF domain
PRINTSPR003671.5E-10100111IPR001471AP2/ERF domain
PRINTSPR003671.5E-10122138IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MNRTKYTEHR TVTTKFVKTL TKHSPESNVV APKIVRISYT DGDATDSSGD EAEERIVVKR  60
TINEIRIEEC SASRLFSKPK APRCRANDES NNVSPNGKKF RGVRQRPWGR WAAEIRNPTS  120
RARVWLGTFD TAEEAGLAYD RAAIAFKGHL AFTNFIKPPE IAVPATPDYD CKPIPWETSP  180
NVAVMGECDH SLRSPTSVLS PGEAEIEWRP VGISERDDFG AFESEFLLND CFEPEAPAPI  240
FFDEMRVVPE MLLKDEDFSD LSLDFRSCKW DDVEDYFEGA CDESGAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-1997155362ATERF1
3gcc_A3e-1997155362ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008233221.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008233221.10.0PREDICTED: ethylene-responsive transcription factor CRF4
SwissprotQ9SUE37e-44CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBLM5X4V00.0M5X4V0_PRUPE; Uncharacterized protein
STRINGXP_008233221.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.13e-42cytokinin response factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zwack PJ,Compton MA,Adams CI,Rashotte AM
    Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance.
    Plant Cell Rep., 2016. 35(3): p. 573-84
    [PMID:26650835]
  3. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]