PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008232676.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 256aa    MW: 25985.3 Da    PI: 7.8515
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008232676.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260127.37.2e-40311311100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC+ +C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPvyG+v++i++lqqq+ +l+ael
  XP_008232676.1  31 PCGACKFLRRKCVLGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVSLQAEL 125
                     7***********************9989******************************************************************* PP

          DUF260  95 allkee 100
                     ++l+++
  XP_008232676.1 126 SYLQAH 131
                     *99986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.64930132IPR004883Lateral organ boundaries, LOB
PfamPF031958.1E-3931129IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MNATNPSGSG GGGGGGGGGS SSSGGGGGGG PCGACKFLRR KCVLGCIFAP YFDSEQGAAH  60
FAAVHKVFGA SNVSKLLLHI PVHKRLDAVV TICYEAQARL RDPVYGCVAH IFALQQQVVS  120
LQAELSYLQA HLATLELPSP PPPPPPPSII TPPPLSISDL PLAASSMPAT YDLSSLFEPM  180
VIQQPWVVQH RALHDPRNHQ FGGGSSGSGS STGGGGGGGG GDLQSLAREL LHRHGQSLSP  240
GSLPCSEASP SQSPSK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1819SGGGGGGGGGGS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00314DAPTransfer from AT2G45420Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008232676.10.0PREDICTED: LOB domain-containing protein 18
SwissprotO221313e-83LBD18_ARATH; LOB domain-containing protein 18
TrEMBLM5X2B01e-132M5X2B0_PRUPE; Uncharacterized protein
STRINGVIT_15s0048g00830.t013e-97(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17713493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45420.17e-70LOB domain-containing protein 18