PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008232675.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 228aa    MW: 24674 Da    PI: 8.1634
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008232675.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.71.1e-39211211100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC k+C++apyf +eq +++fa+vhk+FGasn +kll ++p+++r da+ +l+yeA ar+rdPvyG+v++i++lqqq+ +l+ael
  XP_008232675.1  21 PCGACKFLRRKCIKGCIFAPYFDSEQgTAHFAAVHKVFGASNASKLLLRVPPHKRLDAVVTLCYEALARVRDPVYGCVSHIFTLQQQVVNLQAEL 115
                     7***********************9989******************************************************************* PP

          DUF260  95 allkee 100
                     a+++++
  XP_008232675.1 116 AYVQAR 121
                     **9976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.42420122IPR004883Lateral organ boundaries, LOB
PfamPF031952.7E-3821119IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MSGSSTNGSN NNGGGGGGGG PCGACKFLRR KCIKGCIFAP YFDSEQGTAH FAAVHKVFGA  60
SNASKLLLRV PPHKRLDAVV TLCYEALARV RDPVYGCVSH IFTLQQQVVN LQAELAYVQA  120
RLATLQRAPP PPPLSQLECP PPPRSLHYSS SHINVTSSPC SEFVPTSNLT HFDPLQTVPH  180
TAEMTSLFNS LDQELIDGED LQALAREFVC RYLPGVRLNK PSTSHQNF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008232675.11e-169PREDICTED: LOB domain-containing protein 19
SwissprotO813222e-68LBD31_ARATH; LOB domain-containing protein 31
TrEMBLM5X8001e-135M5X800_PRUPE; Uncharacterized protein
STRINGGLYMA03G02631.12e-80(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17713493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45410.14e-66LOB domain-containing protein 19