PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008232505.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 217aa    MW: 24295 Da    PI: 6.9557
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008232505.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.33.7e-18105155255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+++AeIrdp +ng  +r++lg++ t+e+A  a+++a+ k++g
  XP_008232505.1 105 HYRGVRRRP-WGKFAAEIRDPAKNG--ARVWLGTYETPEDAGLAYDRAAFKIRG 155
                     7********.***********9987..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.5E-30104164IPR001471AP2/ERF domain
PfamPF008471.1E-12105155IPR001471AP2/ERF domain
CDDcd000181.48E-28105165No hitNo description
PROSITE profilePS5103223.38105163IPR001471AP2/ERF domain
SMARTSM003803.1E-36105169IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-22105164IPR016177DNA-binding domain
PRINTSPR003675.4E-13106117IPR001471AP2/ERF domain
PRINTSPR003675.4E-13145165IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MYGETTLELE SNLALLESIR HHLLDDLEPQ ATSFSGNNVS TFPFFVTENW WESSLEAEHV  60
HNTMQDKLEV LRDVNYVGCV VSNDEVQLKE QVAEGAVHAP RGERHYRGVR RRPWGKFAAE  120
IRDPAKNGAR VWLGTYETPE DAGLAYDRAA FKIRGCKAKL NFPHLIGSSN VEPVRVTPKR  180
RRSPDQCSSS SSSAYTSDNG SSKPKRREAG VDNHLAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-32104169469ATERF1
3gcc_A8e-32104169469ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:11950980}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008232505.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by wounding. Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1, but seems to not be affected by ethylene. Induction by salicylic acid (SA) is controlled by growth and/or developmental conditions, and seems to be more efficient and independent of PAD4 in older plants. {ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:12068110}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008232505.11e-162PREDICTED: ethylene-responsive transcription factor 1-like
SwissprotQ8L9K14e-45ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBLA0A314V2011e-144A0A314V201_PRUYE; Ethylene-responsive transcription factor 13
STRINGXP_008232505.11e-162(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51233157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.13e-38ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Maimbo M,Ohnishi K,Hikichi Y,Yoshioka H,Kiba A
    Induction of a small heat shock protein and its functional roles in Nicotiana plants in the defense response against Ralstonia solanacearum.
    Plant Physiol., 2007. 145(4): p. 1588-99
    [PMID:17965181]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]