PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008232503.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 241aa    MW: 26314 Da    PI: 5.5763
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008232503.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.91.5e-1995145255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +++GVr+++ +g+++AeIrdp++ng  +r++lg++ tae+A  a+++a+ k++g
  XP_008232503.1  95 HFRGVRRRP-WGKYAAEIRDPKKNG--ARVWLGTYETAEDASLAYDRAAYKMRG 145
                     69*******.***********9998..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.4E-3194154IPR001471AP2/ERF domain
PfamPF008476.3E-1395145IPR001471AP2/ERF domain
SMARTSM003803.3E-3695159IPR001471AP2/ERF domain
CDDcd000184.54E-2995155No hitNo description
SuperFamilySSF541711.57E-2295154IPR016177DNA-binding domain
PROSITE profilePS5103223.19695153IPR001471AP2/ERF domain
PRINTSPR003675.4E-1396107IPR001471AP2/ERF domain
PRINTSPR003675.4E-13135155IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MSTESITSSN WALLESIRQH LLDDDFETQA TFLAGVAEDD APLYDCAPST SSSSHAHFGG  60
EGWGDTIAIL DHDLDRSNDV KVEARVNHAP SSGRHFRGVR RRPWGKYAAE IRDPKKNGAR  120
VWLGTYETAE DASLAYDRAA YKMRGSKAKL NFPHLIGSHD SEPGRVAPKR GSPEPSFSSA  180
TSSDDGGSPT LKKRKSGVDS AAKAKLEEAA EQFHVFQVDS LTLGGQLFVD ELYTYDELLA  240
I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-3291158168ATERF1
3gcc_A1e-3291158168ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008232503.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by ethephon (ethylene-releasing compound) in buds and to a lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by both protein kinases and protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008232503.11e-178PREDICTED: ethylene-responsive transcription factor 13-like
SwissprotQ404797e-49ERF2_TOBAC; Ethylene-responsive transcription factor 2
TrEMBLA0A314UW561e-162A0A314UW56_PRUYE; Ethylene-responsive transcription factor 13-like
STRINGXP_008232503.11e-177(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51233157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.14e-44ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Nakano T,Nishiuchi T,Suzuki K,Fujimura T,Shinshi H
    Studies on transcriptional regulation of endogenous genes by ERF2 transcription factor in tobacco cells.
    Plant Cell Physiol., 2006. 47(4): p. 554-8
    [PMID:16452120]