PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008232472.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 215aa    MW: 23950 Da    PI: 7.2161
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008232472.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-18107157255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+++AeIrdp +ng  +r++lg++ t+e+A  a+++a+ kl+g
  XP_008232472.1 107 HYRGVRRRP-WGKFAAEIRDPAKNG--ARVWLGTYETPEDAGLAYDRAAFKLRG 157
                     7********.***********9987..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.3E-30106166IPR001471AP2/ERF domain
PfamPF008476.4E-13107157IPR001471AP2/ERF domain
CDDcd000182.79E-30107167No hitNo description
SuperFamilySSF541711.24E-22107166IPR016177DNA-binding domain
SMARTSM003801.6E-36107171IPR001471AP2/ERF domain
PROSITE profilePS5103223.485107165IPR001471AP2/ERF domain
PRINTSPR003675.6E-13108119IPR001471AP2/ERF domain
PRINTSPR003675.6E-13147167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MYGEKTLELE SDLAFLESIR HHLLDDLEPQ AMSFTGTNVP LIFPLSVTEN GWESSLKAEH  60
IENDVQGMLG ALNDVNYVGC VVSDDKIELK EQKVAARAVH PPREERHYRG VRRRPWGKFA  120
AEIRDPAKNG ARVWLGTYET PEDAGLAYDR AAFKLRGCKA RLNFPHLIGS SNVEPVRVSP  180
KRRRSLDLSS SSFSSDNGSP KPKLSKDGVD NHLAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-32106171469ATERF1
3gcc_A9e-32106171469ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008232472.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008232472.11e-159PREDICTED: ethylene-responsive transcription factor 1A-like
TrEMBLM5W4U81e-136M5W4U8_PRUPE; Uncharacterized protein
STRINGXP_008232472.11e-158(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51233157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.17e-36ethylene-responsive element binding factor 13