PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008232393.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 272aa    MW: 29806.5 Da    PI: 4.5156
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008232393.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.3e-1885134255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr ++ +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+++++g
  XP_008232393.1  85 TYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAALAIKG 134
                     69****998.**********843...6***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.0E-3685148IPR001471AP2/ERF domain
PROSITE profilePS5103223.27585142IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.0E-3285143IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-2185143IPR016177DNA-binding domain
PfamPF008478.2E-1385134IPR001471AP2/ERF domain
PRINTSPR003672.2E-108697IPR001471AP2/ERF domain
CDDcd000181.65E-3386144No hitNo description
PRINTSPR003672.2E-10108124IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MAKQINIESD AQENLLTSSS SSTSSTTTTS DSLADKNTQN SENCTSQKGS SINGQEEPNN  60
ENEQDNSKKK KRQRNSDQSD GKHPTYRGVR MRSWGKWVSE IREPRKKSRI WLGTYPTAEM  120
AARAHDVAAL AIKGASAFLN FPELAQTLPQ PDSKSPKDIQ AAAAKAAAAA ADASEEKQII  180
CETEAEEAEP SSKVKLPMSS NSTLSMDNIN AQESTSTCAS TDYDDDKLFD LPDLFMDGTN  240
GSDQFCYSTS STWHLCAADT GFRLEDPFLW EY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-17831431273Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16873KKKRQR
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00312DAPTransfer from AT2G44940Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008232393.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008232393.10.0PREDICTED: ethylene-responsive transcription factor ERF034
SwissprotQ8LBQ77e-73ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLM5XES41e-174M5XES4_PRUPE; Uncharacterized protein
STRINGXP_008232393.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.19e-58ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]