PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008231885.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family FAR1
Protein Properties Length: 857aa    MW: 97138.5 Da    PI: 6.6202
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008231885.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR143.41.1e-1364138290
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                      Y++Y+++vGFs+ + + +++k +g i++ +f Cs+e +++++ ++              C+a+l+++++  + w+ tk++++HnH+++
  XP_008231885.1  64 LYDAYSRHVGFSTHVGQFSRTKPDGPIVTWDFACSREVFKRKNVES--------------CNAMLRIERKGANSWVATKFVEDHNHSMV 138
                     69**************************************999877..............**************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.7E-1164138IPR004330FAR1 DNA binding domain
PfamPF105517.7E-30270362IPR018289MULE transposase domain
PfamPF044341.2E-11547581IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096611.276547583IPR007527Zinc finger, SWIM-type
SMARTSM005752.7E-8558585IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 857 aa     Download sequence    Send to blast
MDTEVVVDVE GENMEHHMEE NTEPGEKQNV NQNFTGREIS IQDDGNTKPH VGMEFESEEA  60
AKTLYDAYSR HVGFSTHVGQ FSRTKPDGPI VTWDFACSRE VFKRKNVESC NAMLRIERKG  120
ANSWVATKFV EDHNHSMVSP NKVHYLRPRR HFAGATKNAA ETLDATTDVY FATEGNHVSY  180
EPNRGGRSVS PVEPNHPARN LGPVNYIRPS SRKRTLGRDA QNLLNYFKKM QAENPGFYYA  240
IQLDDENRMT NVFWTDARSR TAYNYFGDAV IFDTMYRPNQ YQVPFAPFTG VNHHGQMVLF  300
GCALLLDESE SSFTWLFRTW LSAMNDKPPV SITTDQDRAI QVAVAQVFTQ TRHCICKWHI  360
LREGQERLAH TYLAHPSLYG ELYSCINFSE TIEDFESSWA SLLERYDLLR NDWLQAVYNA  420
RKQWAPVYFR GTFFAAIFSN QGVSSFFDGY VNQQTSIPLF FKQYERALEL SLEKEIEADY  480
DTMCTTPVLK TPSPMEQQAA NLYTKKVFAK FQEELVETFV YTANKIEGDG LVSKYRVAKY  540
EHDDKAYIVT LNVSEMKSSC SCQMFEYSGI LCRHILTVFT VTNVLTLPTH YILKRWTRNA  600
KSGVGLDEQS SDNQGIETLN MRFNNLCREA IKYAEEGAIA VETYNAAMSA LREGGKKISV  660
VKKNVAKVTP PSSQASGNIQ EDNMKKSPLP LGEMAPSLWP WQEALPHRFN LNDGGVPVAD  720
LNQPSMAPVS IHPDGAHPDN TVVLTCFKSM AWIIENKNST SAGKVAVINL KLQDYGKNPA  780
GETEVQFRLT RVTLEPMLRS MAYISQQLSA PANRVAVINL KLQDTKTTSG ETEVKFQVSR  840
DTLGSMLKSM AYIREQL
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008231885.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008231884.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
RefseqXP_008231885.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
SwissprotQ9ZVC90.0FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBLM5X6W30.0M5X6W3_PRUPE; Uncharacterized protein
STRINGXP_008231884.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.20.0FAR1-related sequence 3
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]