PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008231033.1
Common NameICEb
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 539aa    MW: 58985 Da    PI: 5.3626
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008231033.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.71.6e-11360402754
                     HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                     ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A++Y+k+L
  XP_008231033.1 360 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIDYLKEL 402
                     79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.682353402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-16356423IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-14359408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-9359402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-15360415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.76E-13360406No hitNo description
CDDcd048735.11E-7473514No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010440Biological Processstomatal lineage progression
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050826Biological Processresponse to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MLPMSGVWMG GDEDDAASWT RSSSNNNNNN SNNEGEPKNE QQSSLGASFS NFKSMLEGDW  60
YMNNVLNPTH HQDLHSLPNH RQPDIRDIAC FSENTLMLQP MDSSASCSPS QVFSLDPSPP  120
QHLFPPKYCF SSLLNVVSTN PFDNGFDLGC DSGLLSSFQG NQPSNSSALM GFTALNSQSQ  180
MGTPELSSSA EFPTTRLLPA PNNDTELDGD FSLTSLQGFD GSGGAQLLNR AKPLRPLHVF  240
PPVGAHPTLF QKRAALRQNS GGDGTDKLGN LEISGPRYGG VLESLERKRK KNVEGEIEEG  300
SMDASGLNYD SDEFNEYSQV EENVKNVKNA GSNSNANSSV TGIDGDRKGK KKGLPAKNLM  360
AERRRRKKLN DRLYMLRSVV PKISKMDRAS ILGDAIDYLK ELLQRINDLH NELESAPPGS  420
LLPPSSCFQP LTPTPPTLPC HVKEELCPSS FPSPQGQSAK VEVRVREGRT VNIHMFCARR  480
PGLLLSAMRA LDNLGLDIQQ AVISCFNGFA LDVFCAEQCR ESQFLPEQIK AVLLDXXXX
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1286290RKRKK
2349367KKKGLPAKNLMAERRRRKK
3361368ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR6765370.0KR676537.1 Prunus mume Inducer of CBF expression b (ICEb) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008231033.10.0PREDICTED: transcription factor ICE1-like
SwissprotQ9LSE21e-156ICE1_ARATH; Transcription factor ICE1
TrEMBLA0A0S2CW960.0A0A0S2CW96_PRUMU; Inducer of CBF expression b
STRINGVIT_14s0068g01200.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24143482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-138bHLH family protein