PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008229713.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family FAR1
Protein Properties Length: 250aa    MW: 29054.8 Da    PI: 8.0336
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008229713.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR174.32.6e-2349136290
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                      Yn+YA++vGFsvrk +++++ +++   +  + Cskeg+r +++ + e ++ ++ etrtgC+a+++   ++ d++w+v++++ eHnHela
  XP_008229713.1  49 LYNNYATRVGFSVRKGQKRYN-TKKVLRQFSYLCSKEGFRLDSDPS-ELSKVSKLETRTGCEASIRFAFQDkDDTWKVSHFVPEHNHELA 136
                     7****************9998.66779999************9999.99999****************9999****************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.8E-2049136IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MMLWPVFIDV ESDEENVREK DPMIVNRVEN IDEDLLGRVV STEEEAYNLY NNYATRVGFS  60
VRKGQKRYNT KKVLRQFSYL CSKEGFRLDS DPSELSKVSK LETRTGCEAS IRFAFQDKDD  120
TWKVSHFVPE HNHELAKPKE RQFLRSNRKV SDSNLGVIKT MVGAGIRTTN TYSYLAEEVG  180
GSQNVGFTKR DCYNVVNKEK MAMIEAGDAQ SLMNLFKRKQ AEDPMFFYTV QVDQANRMTN  240
FFLERWKVTN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008229713.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008229713.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A251QFY51e-140A0A251QFY5_PRUPE; Uncharacterized protein
STRINGXP_008229713.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3607938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-31FAR1-related sequence 5