PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008228768.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 289aa    MW: 31718.8 Da    PI: 9.3044
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008228768.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.93.3e-20148198256
             AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      y+GVr ++ +grW AeIrd       r r++lg+f+taeeAa+a++aa+++l+g+
  XP_008228768.1 148 NYRGVRKRP-WGRWSAEIRDrI----GRCRHWLGTFDTAEEAARAYDAAARRLRGA 198
                     59*******.**********32....25**************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.92E-17147206No hitNo description
PfamPF008474.3E-14148197IPR001471AP2/ERF domain
PROSITE profilePS5103222.893148205IPR001471AP2/ERF domain
SMARTSM003809.5E-32148211IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-21148205IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.7E-29148205IPR001471AP2/ERF domain
PRINTSPR003671.2E-10149160IPR001471AP2/ERF domain
PRINTSPR003671.2E-10171187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MATVPFCHNP LTFYAPETFR FLSEANSLYE SFFSKTHFSV SSVSFPNQLN ISNPPCHTNV  60
SAEIPICGVS SKESESQTET PPVLDGIAAV VGQHVLYGSQ RSCNVPTNGE TTQISEFGYC  120
SERIGSAETS KKDADHKKGI GNLSVQKNYR GVRKRPWGRW SAEIRDRIGR CRHWLGTFDT  180
AEEAARAYDA AARRLRGAKA RTNFEIPSVF PLSSPCSSSS SSDAKRVIRG KNNIKGLKSK  240
RKCSVVTCVA HLFSEAPTHL RSQVMEIKEN VELDLKLGVG VSDIGKTSP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-18147206161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008228768.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008228768.10.0PREDICTED: ethylene-responsive transcription factor ERF084
TrEMBLM5WY960.0M5WY96_PRUPE; Uncharacterized protein
STRINGXP_008228768.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130232631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.16e-20ERF family protein