PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008228719.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family FAR1
Protein Properties Length: 1371aa    MW: 158142 Da    PI: 6.9483
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008228719.2genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR168.31.9e-2160143189
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                     ++Yn YAkevGF+vr+++s  +++++e + + ++Cs +g+++ ++ +     r r+etrtgC a+l++++ ++++w+v ++ leHnH l
  XP_008228719.2  60 NYYNCYAKEVGFRVRVKNSWFKRNSREKYGAVLCCSSQGFKRIKDVN-----RLRKETRTGCPAMLRMRLVDSKRWRVLEVTLEHNHLL 143
                     69*****************************************9988.....99*********************************87 PP

2FAR1705.8e-22763845290
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     fYn YAk+ GF vr+s++ ++ +++e ++ ++ Cs  g++++++ +     r+r+etrtgC a++k +++++++w+v+++eleHnH ++
  XP_008228719.2 763 FYNCYAKQQGFGVRVSNTWYR-KSKERYRGKLSCSSAGFKKKSEAN-----RPRPETRTGCPAMIKFRLMDSNRWRVIEVELEHNHLIS 845
                     9***************99997.66779**************99888.....***********************************876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-1860143IPR004330FAR1 DNA binding domain
PfamPF105511.8E-32262355IPR018289MULE transposase domain
PROSITE profilePS509669.891549585IPR007527Zinc finger, SWIM-type
PfamPF044343.8E-4551581IPR007527Zinc finger, SWIM-type
SMARTSM005751.1E-6560587IPR006564Zinc finger, PMZ-type
PfamPF031014.5E-19763845IPR004330FAR1 DNA binding domain
PfamPF105514.7E-289661060IPR018289MULE transposase domain
PROSITE profilePS509668.56812531289IPR007527Zinc finger, SWIM-type
PfamPF044345.1E-412611286IPR007527Zinc finger, SWIM-type
SMARTSM005756.7E-612641291IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1371 aa     Download sequence    Send to blast
MEVASANIEL VPDGECNEIV TDRDGVLTEL DVQNGVLEGR KEFVAPAVGM EFESYDDAYN  60
YYNCYAKEVG FRVRVKNSWF KRNSREKYGA VLCCSSQGFK RIKDVNRLRK ETRTGCPAML  120
RMRLVDSKRW RVLEVTLEHN HLLGAKIYKS IKKVGSGMKR KSQSSSDAEK RTIKLYRALV  180
IDSGGDGTSN SNPTDIRNFP DHPNQLNLKK GDTQAIYNYL CRMQLTNPNF FYLMDLNDDG  240
RLRNVFWMDA RCRAACGYFA DVIYFDNTYL SNKYEIPLVA FVGINHHGQT VLLGCALLAG  300
ETTESYTWLF RAWLTCVSGH FPQTIITDRC KALQSAIAEV FPRCHHRFGL SHIIKKVPEK  360
LGGLRNYDAI RKALIKAVYE TLKVIEFEAA WGFMIQRFGV GDHEWLRSLY EDRFRWAPVY  420
LKETFFAGMS AARPGETLSP FFDRYVHKQT PLKEFLDKYE LALQKKHKEE ALADIESRSS  480
SPILKTRCSF EFQLSKVYTR EIFKKFQFEV EEMYSCFSTT QLHIDGPIII FLVKERVVVE  540
GNRREIRDYE VLYNRTAGEV RCICSCFNFY GYLCRHALCV LNFNGVEEIP SKYILSRWKK  600
DFKRIYIPDH SSGNADDTDR MQWFNQLYRS ALQIVEEGVI SPDHYKVALQ AFEESLNRVH  660
DVEDKHEFSS IGLSHFVRHA PLSLLSECTC RFSGNSPATL RSDMDEVSLN TEPAGDDDAD  720
EFEIEGDCAM TDFISQTGII QGENPLPPVV GMEFDSYEDV YYFYNCYAKQ QGFGVRVSNT  780
WYRKSKERYR GKLSCSSAGF KKKSEANRPR PETRTGCPAM IKFRLMDSNR WRVIEVELEH  840
NHLISPASGK FYKSHKSVGV GTKRALQLDT AEEVQKIRLF RTVIIDSEGN GSIDVDEGES  900
GNRVDYSNQL KLKEGDAQAV QIYFSRLQLM DPNFFYVVDL NEKGCLRNLF WADARTRVAY  960
SYFCDIVAID TTCLENKFEV PLVSFIGVNH HGQSVLLGCG LLASETVESY TWLFRAWLTC  1020
ILGRPPQAII TSQCRTLQTA ISDVFPRASH CLCLSHIMQK IPENLGGLFE YEAIKESFSR  1080
AVYYSLRVEE FEAAWEDMVQ HHGIRDHKWL QALFDDRKRW VPVYLKDIFL AGMSPVQPGE  1140
VVSSYFKEFL HKDTPLKEFL DKYDQALQTH HRLEALADLD SRNSSYMLKS RCYFELQLSK  1200
VYTNDILRKF ESEVEGMYSC FSTSQLNPDG PVITYIVKEQ TEVDGNRREV RDHEVLYNPS  1260
EMEVLCICGM FNLRGYLCRH ALSVLNQNGV EEIPTQYVLS RWRKDIKRNY IFDHSCSGID  1320
INNPVHRYDH LYKCIVQVVE EGRKSQDRYK VAFGALDEIL NKLCLTEDPA L
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269|PubMed:15591448}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008228719.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008228719.20.0PREDICTED: uncharacterized protein LOC103328106
SwissprotQ9SSQ40.0FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBLA0A371GLZ60.0A0A371GLZ6_MUCPR; Protein FAR1-RELATED SEQUENCE 6 (Fragment)
STRINGXP_004486559.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.10.0FAR1-related sequence 6
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]