PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008228463.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 251aa    MW: 27163.9 Da    PI: 6.64
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008228463.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.9e-1976126155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     + y+GVr ++ +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  XP_008228463.1  76 PVYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFSTPEMAARAHDVAALSIKG 126
                     68*****998.**********843...6***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.2E-1376126IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.3E-3277135IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-2177135IPR016177DNA-binding domain
SMARTSM003801.6E-3677140IPR001471AP2/ERF domain
PROSITE profilePS5103223.11777134IPR001471AP2/ERF domain
PRINTSPR003672.2E-107889IPR001471AP2/ERF domain
CDDcd000182.41E-3278136No hitNo description
PRINTSPR003672.2E-10100116IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MAAEPNNSEL AQSTSNSSQG SPSSSSRLLQ THPTSPSNSL KTKTRTHKAS SQHQQQHQVA  60
LKRKRDDDSS SSSKHPVYRG VRMRSWGKWV SEIREPRKKS RIWLGTFSTP EMAARAHDVA  120
ALSIKGNSAI LNFPELAELL PRPASLKPQD VQAAATKAAA MVHLTSTSSS SSSSSSSSSS  180
SLLVSQSEGP ESEELGEIVE LPNIEGSFDS PESRNEFILV NDSEDGWVYP SMGLEGVEFN  240
LWGFFSSDIG S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1972134972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008228463.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008228463.10.0PREDICTED: ethylene-responsive transcription factor TINY
SwissprotQ9LYD36e-59DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A251PW621e-122A0A251PW62_PRUPE; Uncharacterized protein
STRINGXP_008228463.11e-180(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.12e-51ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,B├╝low L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]