PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008228348.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 229aa    MW: 25483.9 Da    PI: 9.7261
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008228348.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF63.81.9e-203381149
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    k+ie+k +r+vtfskR++gi+ KA ELSvL +ae+a +++ss+gk++ +
  XP_008228348.1 33 KKIEEKNKRHVTFSKRKKGIFNKAAELSVLSGAEIATMVVSSNGKVFCF 81
                    68*******************************************9877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.882585IPR002100Transcription factor, MADS-box
SMARTSM004321.2E-282584IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.1E-2526100IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-172747IPR002100Transcription factor, MADS-box
PfamPF003191.4E-193481IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-174762IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-176283IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MAKIKIPKSE IADNNITSDG KKGSKGRRRI EIKKIEEKNK RHVTFSKRKK GIFNKAAELS  60
VLSGAEIATM VVSSNGKVFC FGTPNYDTVI NRYLGHHTAS LAAAGQLDHG ALLHGKTTRS  120
SNKQVENYVE ATRHLEAEKI SFKGDEAGFS IQMYHNGEIR GNYYVNGSVD WFDYCDKDRM  180
LMTEIDVMVK ELGHEGLIKN VSHWIGFGEA DRSAKGVTRG FYPLDPAQG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mnm_A3e-20997288PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)
1mnm_B3e-20997288PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008228348.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008228348.11e-171PREDICTED: agamous-like MADS-box protein AGL27
TrEMBLA0A314UUT22e-89A0A314UUT2_PRUYE; Agamous-like MADS-box protein AGL62
STRINGXP_008228348.11e-170(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1658149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.14e-16AGAMOUS-like 61