PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008228057.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 189aa    MW: 20623.3 Da    PI: 10.1257
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008228057.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.93.3e-2095145256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                     ++ GVr ++ +gr++AeIrdp++   rkr++lg+++taeeAa+ +++a++kl+g+
  XP_008228057.1  95 KFIGVRKRP-WGRYAAEIRDPTQ---RKRVWLGTYDTAEEAAAVYDRAALKLRGP 145
                     789******.**********965...5**************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381232.3E-461184IPR017392AP2/ERF transcription factor ERF/PTI6
PROSITE profilePS5103222.06295152IPR001471AP2/ERF domain
PfamPF008474.6E-1395144IPR001471AP2/ERF domain
CDDcd000181.29E-2995151No hitNo description
SuperFamilySSF541716.54E-2295153IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.1E-2895152IPR001471AP2/ERF domain
SMARTSM003801.2E-3495158IPR001471AP2/ERF domain
PRINTSPR003672.3E-896107IPR001471AP2/ERF domain
PRINTSPR003672.3E-8118134IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MTTTTTTLTK PKMIHQNQNP PPNPTRLPPK QLVRIILADA DATDSSSDED SVVPGVKRHV  60
RKISRELSSP SNCSRHSKLS KRRSPPEPDP ASREKFIGVR KRPWGRYAAE IRDPTQRKRV  120
WLGTYDTAEE AAAVYDRAAL KLRGPHAVTN FTIPVIAEET VADEVVPAAG SSHVSEIGGE  180
GGAAGYVLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-1996159670ATERF1
3gcc_A1e-1996159670ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008228057.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008228057.11e-136PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like
SwissprotQ9SUE31e-32CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBLA0A251PTU11e-112A0A251PTU1_PRUPE; Uncharacterized protein
STRINGXP_008228057.11e-136(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55853252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53290.12e-24cytokinin response factor 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zwack PJ,Compton MA,Adams CI,Rashotte AM
    Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance.
    Plant Cell Rep., 2016. 35(3): p. 573-84
    [PMID:26650835]
  3. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]